RetrogeneDB ID: | retro_chof_2348 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_67490:3406..4012(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC35E3 | ||
Ensembl ID: | ENSCHOG00000013347 | ||
Aliases: | None | ||
Description: | solute carrier family 35, member E3 [Source:HGNC Symbol;Acc:20864] |
Percent Identity: | 78.22 % |
Parental protein coverage: | 58.7 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | IVAIQTLCYKKTFSTGLQLR-IPITLGVILNSYYDVKFNFLGMVYAALGVLVTSLYQVWVGAKQHELQVN |
I.AIQT.CYK.TFST...L..IPITLGVIL..YY.VKFNF.GMV.AALGVLVTSLY.VW.G.KQ.ELQVN | |
Retrocopy | IIAIQTVCYKGTFSTRVKLTLIPITLGVILSPYYNVKFNFFGMVFAALGVLVTSLY*VWLGTKQLELQVN |
Parental | SMQLLYYQAPMSSAMLLVTVPFFEPVFGERGIFGPWSISALLMVLLSGVIAFMVNLSIYWIIGNTSPVTY |
SMQLL.YQAPMS.AM.LVTVPFFEP.F.E.GIFGPWSISALLM.L.SG..AFMVNLS.Y.IIGNT.PVTY | |
Retrocopy | SMQLLDYQAPMSPAMPLVTVPFFEPKFREGGIFGPWSISALLMLLQSGMTAFMVNLSMYYIIGNTLPVTY |
Parental | NMFGHLKFCITLFGGYVLLKDP--LSINQGLGILCTLFGILAYTHFKLSEQEGSKSKLVQRP |
NMF.HLKF.ITL.GGY.LLKDP....INQGLGI.CTLFGIL.YTHFKLSEQEGSKSK....P | |
Retrocopy | NMFQHLKFHITLYGGYGLLKDPM*I*INQGLGIFCTLFGILTYTHFKLSEQEGSKSKFI*HP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000031919 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013347 | 1 retrocopy |
retro_chof_2348 ,
|
Cavia porcellus | ENSCPOG00000004322 | 3 retrocopies | |
Homo sapiens | ENSG00000175782 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012605 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060181 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005201 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002545 | 1 retrocopy |