RetrogeneDB ID: | retro_chof_2405 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_72346:5686..6114(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000011552 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.92 % |
Parental protein coverage: | 52.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VGKTDPVTRGIEITVNYLGIQF-DVKFWSQHISFILVGIIIVTSIRGLLITLTKFFYAISSSKSSNVIVL |
VGKTDPVTRGIEITVNYLGIQ..DVKFWSQHISFILVGIIIVTSIRGLLITLTKFFYAISSSKSSNVIVL | |
Retrocopy | VGKTDPVTRGIEITVNYLGIQL<DVKFWSQHISFILVGIIIVTSIRGLLITLTKFFYAISSSKSSNVIVL |
Parental | LLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFNFYHRW-DVIFLVSALSSILFLYLAHKQAPEK |
LLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFNFYHRW.DVIFLVSALSSILFLYLAHKQAPEK | |
Retrocopy | LLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFNFYHRWFDVIFLVSALSSILFLYLAHKQAPEK |
Parental | HMAP |
HMAP | |
Retrocopy | HMAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011552 | 1 retrocopy |
retro_chof_2405 ,
|
Otolemur garnettii | ENSOGAG00000003605 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009225 | 1 retrocopy |