RetrogeneDB ID: | retro_chof_251 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_5515:97734..98374(-) | ||
Located in intron of: | ENSCHOG00000010169 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2CB | ||
Ensembl ID: | ENSCHOG00000003467 | ||
Aliases: | None | ||
Description: | protein phosphatase 2, catalytic subunit, beta isozyme [Source:HGNC Symbol;Acc:9300] |
Percent Identity: | 82.41 % |
Parental protein coverage: | 68.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MDYKEFSKELD-WVE-LKECKQFKENQVQTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFR |
MD.K.F.KELD.W.E.L.ECKQ..E.QV..LC.KAKEILTKESNVQEVRCPVTV.GDVHGQFHDLM.LFR | |
Retrocopy | MDKKVFTKELDQWIEQLNECKQLSESQVKSLC*KAKEILTKESNVQEVRCPVTVFGDVHGQFHDLMKLFR |
Parental | IGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNA |
IGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKV.Y.ERITILRGNHESRQIT.VYGFYDECLRKYGNA | |
Retrocopy | IGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVHYRERITILRGNHESRQITHVYGFYDECLRKYGNA |
Parental | NVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEV-PHEGPMCD-LLWSDPDDRG- |
NVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSI.TLD.I...DR..E...HE.PMCD.L..SDP..R.. | |
Retrocopy | NVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIYTLDFIIEFDRQLET<HHENPMCD>LSISDPNYRV> |
Parental | GWGISP |
.W.ISP | |
Retrocopy | RWFISP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003467 | 9 retrocopies |
retro_chof_1247, retro_chof_1521, retro_chof_1556, retro_chof_2112, retro_chof_2267, retro_chof_2502, retro_chof_251 , retro_chof_273, retro_chof_446,
|
Monodelphis domestica | ENSMODG00000019001 | 2 retrocopies |