RetrogeneDB ID: | retro_chof_2571 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_86860:5384..6468(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAPOLG | ||
Ensembl ID: | ENSCHOG00000014028 | ||
Aliases: | None | ||
Description: | poly(A) polymerase gamma [Source:HGNC Symbol;Acc:14982] |
Percent Identity: | 52.55 % |
Parental protein coverage: | 55.47 % |
Number of stop codons detected: | 11 |
Number of frameshifts detected | 8 |
Parental | FQSFFEKLKHQDG-IRNLRAVEDAFVPVI-KFEFDGIEIDLVFARLAIQSISD-NLDLRDD-SRLRSLDI |
F..F..KL..Q...I..L.A.E.AF.P.I....FD.I.ID..FARL..Q.I....LDL.DD.S.....DI | |
Retrocopy | FH*FYDKLNLQEE<IKDL*ANEEAFLPAI<QLCFDEIKIDILFARLSLQTIPE>DLDL*DD>SLNKNVDI |
Parental | RCIRSLNGCRVTDEILHLVPNKETFR-LTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNAA |
RCIRSLN..RV..EILHL.PN...F..LTLRA.KLW.K....YSN.L.F.GG.S...L.ARTCQ.YPNA. | |
Retrocopy | RCIRSLNCFRVSNEILHLTPNIHSFK>LTLRATKLWIKCHNSYSNILSFFGGIS*TILIARTCQVYPNAI |
Parental | ASTLVHKFFLVFSKWEWPNPV-LLKQ-PEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSTS |
ASTLV.KF..VFSK.EW.N.V.LLKQ..EE.N.NLPV....VNPSDRYHLMPIITPAYPQ.NS.YNVS.S | |
Retrocopy | ASTLVYKF*-VFSK*EWRN*V<LLKQ<AEECNHNLPVAGASVNPSDRYHLMPIITPAYPQRNSIYNVSIS |
Parental | TRTVMVEEFKQGFTVTDEILQGKSDWSKLLEPPNFFQ-KYRHYIVLTASASTEENHLEWVGLVESKIRVL |
...V..EE.K.....TDEIL..K...SKL.E.PNFF..KY..YIVL.A...T....LE.V..VE.K...L | |
Retrocopy | RWMVTGEELKKRLALTDEILLCKAECSKLFEAPNFFK<KYKYYIVLLAGSPTGKQWLE*VS*VE*KLQIL |
Parental | VGNLERNEFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQA |
.G.LE.N.FITLAH..P.SFP..K..H.......MW..G..F................I......VYRQA | |
Retrocopy | FGILEKNDFITLAH*IP-SFPAPKDDHDKEEFHAMWVIGFVFKENNRKLKTSVLILPMISRLSKIVYRQA |
Parental | NNINMLKEGMKIEATHVKKKQLH |
.N........K....HV.KKQLH | |
Retrocopy | INCKIFEVDTKVYEMHV-KKQLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000014028 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000009630 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010861 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006237 | 1 retrocopy |