>retro_chof_2660
CAGAATTCTGGAGGAATGATTCTTCTAGGTTTTCAAGGAAAAGCTTCAAATTGGATTACAGATTAGAGGAATATATAACT
AAATCAAAGAAAGGAAAAAATGGGAGCTTTGTTAACCCTTGGCCAACATGGAGGAATCCCTCTATTCCAAATGCCCTCAG
ATTGTTGATCATAGAAAAAGATCACAGCAATAATCCACATTCCAAAGAGGAACTTGATAAAGAACTCTCAGTGCTTAAGC
CCTATTTCAGCAATGACTCTGTAGTGAAGGAAGCTGGCTTAAGGGTCACATGGCTGAGACATGCAACAGTAATGGTAGAA
ACTGATGAGCTCATAATTCTCATGAATCCCATTTTTAGCGATCATGCTTCACCACCACAGTACATGGATCTAAAATGCTT
TTGTTAGCCTCCATGCACAATAAGCAAGCTGCCTCCAATAGATGTGGTCCTTATCAGTCAAAACCACTGTGATCACCTGG
ACTACAATTCTGTCATTGCTCTGAATGGGTGATTCAGTAATGCATTGAGATGATTTGTGCCTTTGGGTCTCCTTGACTGC
ATGCAGAAATACAGCTAAGAGAATATGATTGAGCTGGACCAGTGGGAGGAGAATTGTGTTTCCAGACATGATAAGGTCAC
CTTTGTCTATCCACCATCCCAGCACTGCTGCAGAGGACTCTAACGGATGACAATAAGGTTCTGTGGGGTGACTGGTCTGT
CTTGAGACCTTGGAATAGATTCTTTTTTTTTGCAGGAGATACTGGTTATTGCCCTGCTTTTGAATAGATGGGAAAAAGAT
TTGGACCTTTTGGTCTTGCAGCTATTCTTATTGGAGCTTATGAACCCAGGTGGCATATGAAATGGCAGCACATAGACCCA
GAAGAAGCTGTAAGGTTTCACACTTATGTCCAAGCAGAGAAATCTGTGGCAATTCACTGGTGAACTTTTGTCTTAGCAAA
TGAGCACTACTTAGACCCTCCAGTGAAACTGCATGAAGCTCTAGGAAGATACAGACTTATGACTGAAGATTTTTTTGTCT
TGAAGCATGGAGAATCAAGATACCAAAATAATAATGATAAAAACTTTGAA
ORF - retro_chof_2660 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
77.24 % |
Parental protein coverage: |
92.88 % |
Number of stop codons detected: |
6 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | RNSGG-SDSSRFSRKSFKLDYRLEEDVTKSKKGKDGRFVNPWPTWKNPSIPNALRWLIMEKDHSNVPRSK |
| .NSGG..DSSRFSRKSFKLDYRLEE..TKSKKGK.G.FVNPWPTW.NPSIPNALR.LI.EKDHSN.P.SK |
Retrocopy | QNSGG<NDSSRFSRKSFKLDYRLEEYITKSKKGKNGSFVNPWPTWRNPSIPNALRLLIIEKDHSNNPHSK |
|
Parental | EELDKELPVLKPYFINDPEKAGVKEAGLRVKWLGHATVMLEMGEILFLTDPIFSQCVSPSQ-VGLKYFCC |
| EELDKEL.VLKPYF.ND.....VKEAGLRV.WL.HATVM.E..E...L..PIFS...SP.Q...LK.FC. |
Retrocopy | EELDKELSVLKPYFSND---SVVKEAGLRVTWLRHATVMVETDELIILMNPIFSDHASPPQYMDLKCFC* |
|
Parental | PPCTIFELPPADVVLISHNHYDHLDYNSVIALNERFGNELRWFVPLGLLDWMQKCGCENVIELDWWEENC |
| PPCTI..LPP.DVVLIS.NH.DHLDYNSVIALN..F.N.LR.FVPLGLLD.MQK...EN.IELD.WEENC |
Retrocopy | PPCTISKLPPIDVVLISQNHCDHLDYNSVIALNG*FSNALR*FVPLGLLDCMQKYS*ENMIELDQWEENC |
|
Parental | VPRHDKVTFVFTPSQHWCK-RTLMDDNKVLWGSWSVLGPWNRFFF-AGDTGYCPAFEEIGKRFGPFDLAA |
| V.RHDKVTFV..PSQH.C..RTL.DDNKVLWG.WSVL.PWNRF...AGDTGYCPAFE..GKRFGPF.LAA |
Retrocopy | VSRHDKVTFVYPPSQHCCR<RTLTDDNKVLWGDWSVLRPWNRFXXXAGDTGYCPAFE*MGKRFGPFGLAA |
|
Parental | IPVGAYEPRWFMKWQHIDPEEAVRIHIDVQAKKSVAIHWGTFVLANEHYLDPPVKLREALGRYGLTTEDF |
| I..GAYEPRW.MKWQHIDPEEAVR.H..VQA.KSVAIHW.TFVLANEHYLDPPVKL.EALGRY.L.TEDF |
Retrocopy | ILIGAYEPRWHMKWQHIDPEEAVRFHTYVQAEKSVAIHW*TFVLANEHYLDPPVKLHEALGRYRLMTEDF |
|
Parental | FVLKHGESRYLNSDDKNVE |
| FVLKHGESRY.N..DKN.E |
Retrocopy | FVLKHGESRYQNNNDKNFE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_2660 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
7 retrocopies.