RetrogeneDB ID: | retro_chof_306 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_6983:14104..14579(+) | ||
Located in intron of: | ENSCHOG00000004962 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GPD1L | ||
Ensembl ID: | ENSCHOG00000012633 | ||
Aliases: | None | ||
Description: | glycerol-3-phosphate dehydrogenase 1-like [Source:HGNC Symbol;Acc:28956] |
Percent Identity: | 83.02 % |
Parental protein coverage: | 57.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ANIANEVAADKFCETTIGSKVMENGLLFKELLQTPNFRITVVDDADTVELCGALKNVVAVGAGFCDG-LR |
AN.ANEVAA.KFCETTIGSKV.ENGLLFKELL.TPNFRITVVDD..TVELCGALKN..A.G.GFC.G.L. | |
Retrocopy | ANTANEVAAEKFCETTIGSKVRENGLLFKELLKTPNFRITVVDDTYTVELCGALKNIIAMGTGFCGG>LL |
Parental | CGDNTKAAVIRLGLMEMIAFAKIFCKGHVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELE |
CGDNTKA.VI.LGLMEM..FA.IFCK..VSTATFLESCGVADLITTCYGG.NRRVA.AFARTG.TIEELE | |
Retrocopy | CGDNTKATVIHLGLMEMTTFARIFCKVQVSTATFLESCGVADLITTCYGGWNRRVAGAFARTGRTIEELE |
Parental | NEMLNGQKLQGPQTSAEVY |
.E.LNGQKLQGPQ.SAEV. | |
Retrocopy | KERLNGQKLQGPQASAEVH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009826 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012633 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000013996 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011060 | 1 retrocopy | |
Mus musculus | ENSMUSG00000050627 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010093 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013243 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016132 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026455 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000021977 | 1 retrocopy |