>retro_chof_314
ATGCAGCGCCGGGACGACCCCGCCGCGCGCATGATCCGGTCTTCGGGCCGCAGCGGTTCCATGGACCCCTCGGGAGCCCA
CTCCTCAGTGCGTCAGGCGCCGTCTCGGCAGCCGCCGCTGCCTCACCGGTCCCGGGGAGGCGGAGGAGGATCCCGAGGGG
CCGCCCGGGCTTCGCCCGCCACGCAGCCGCCACCGTTGCTACCGCCCTCGGCCACGGGTCCCGACGCGACAGTGGGCGGT
CCGGCGCCGACCCCGCTGCTGCCCCCTTCAGCCACTGCCTCCGTCAAGATGGAGCCGGAGAACAAGTACCTGCCGGAACT
CATGGCCGAGAAGGACTCGCTCGACCCGTCCTTCACTCATGCCATGCAGTTGCTGACGGCAGAAATTGAGAAGATTCAGA
AAGGGGATTCAAAAAAGGATGATGATGAGAATTACTTGGATTTATTTTCTCACAAGAACATGAAGCTGAAGGAGCGGGTG
CTGATACCTGTCAAGCAGTATCCCAAGTTTAATTTTGTGGGGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACT
GCAAGAGGAGACTGGTGCAAAGATCTCTGTGTTGGGAAAGGGCTCAATGAGAGACAAAGCCAAGGAGGAAGAGCTGCGCA
AAGGTGGAGACCCCAAATATGCCCACCTGAATATGGATCTGCATGTTTTCATTGAAGTCTTTGGACCCCCGTGTGAGGCT
TATGCTCTTATGGCCCATGCCATGGAGGAAGTAAAGAAGTTTCTAGTACCAGATATGATGGATGATATCTGCCAGGAACA
GTTTCTAGAGCTGTCCTACTTGAATGGAGTACCTGAGCCCACCCGTGGACGTGGGGTGCCAGTGAGAGGCCGAGGAGCTG
CACCTCCCCCTCCACCTGTTCCCAGGGGC
ORF - retro_chof_314 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
99.34 % |
Parental protein coverage: |
68.33 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MQRRDDPAARMIRSSGRSGSMDPSGAHSSVRQAPSRQPPLPHRSRGGGGGSRGAARASPATQPPPLLPPS |
| MQRRDDPAARMIRSSGRSGSMDPSGAHSSVRQAPSRQPPLPHRSRGGGGGSRGAARASPATQPPPLLPPS |
Retrocopy | MQRRDDPAARMIRSSGRSGSMDPSGAHSSVRQAPSRQPPLPHRSRGGGGGSRGAARASPATQPPPLLPPS |
|
Parental | ATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLTAEIEKTQKGDSKKD |
| ATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLTAEIEK.QKGDSKKD |
Retrocopy | ATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLTAEIEKIQKGDSKKD |
|
Parental | DDENYLDLF-HKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEE |
| DDENYLDLF.HKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEE |
Retrocopy | DDENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEE |
|
Parental | ELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEP |
| ELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEP |
Retrocopy | ELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEP |
|
Parental | TRGRGVPVRGRGAAPPPPPVPRG |
| TRGRGVPVRGRGAAPPPPPVPRG |
Retrocopy | TRGRGVPVRGRGAAPPPPPVPRG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_314 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.