RetrogeneDB ID: | retro_chof_325 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_7351:67227..68015(-) | ||
Located in intron of: | ENSCHOG00000001647 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000008413 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.06 % |
Parental protein coverage: | 55.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | FKTMRGGPVWKKHFITYRINNYTTDLARADVDDAIQKAFQVWSDVT----PLKFRRISAGEADIMILFSR |
FKTMRGGPV.KKH.ITYR.NNYTTDL..ADVD.A.QKAFQVWSDVT....PLKF..I..GEADIMI..S. | |
Retrocopy | FKTMRGGPV*KKHCITYRSNNYTTDLVHADVDYASQKAFQVWSDVTYHRPPLKFININTGEADIMISSSC |
Parental | REHGDFYPFDGKNGILAHAFGPGAGIGGDAHFDDDEIWTKNSRGHNFFLVAVHEIGHSLGLDHSNDPKAI |
...G..YPFDGK.G.LAHAFGPGAGIG.DAHFD.DEIWTKNSRG.N.FLV.VHEI.HSLG..HSN.P... | |
Retrocopy | GAQGVLYPFDGKSGVLAHAFGPGAGIGEDAHFDEDEIWTKNSRGLNLFLVVVHEICHSLGPNHSNEPRVV |
Parental | -MFPTYRYVDLHTFSLSSDDIRGIQFLYGGPEQHQPKP-VPDEDVCDPNLRFNAVTTVGNKIFFFKDRFF |
.MFPTY.YVD..TFSLS...I...QFLY.GPEQHQPKP..P....C.PNLRF.AV..V.N.IFF.K.RFF | |
Retrocopy | <MFPTYSYVDPNTFSLSTVNIHVTQFLYRGPEQHQPKP>IPNLSICGPNLRFDAVIIVENIIFFLKNRFF |
Parental | WWKHVETPKISISSI-SNLWPTLPSGIQAAYEIGARNEVFLFKDDKYWLISNLRIH |
WWKH.ETPKIS.S.I.SNLWPTL.SGIQAAYEIGARNEVFLFKDDKYW.ISNLR.H | |
Retrocopy | WWKHAETPKISVSLI<SNLWPTLLSGIQAAYEIGARNEVFLFKDDKYW*ISNLRTH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008413 | 6 retrocopies | |
Equus caballus | ENSECAG00000019445 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000010062 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004250 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010221 | 1 retrocopy |