RetrogeneDB ID: | retro_chof_486 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_113650:4298..4846(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENOPH1 | ||
Ensembl ID: | ENSCHOG00000003283 | ||
Aliases: | None | ||
Description: | enolase-phosphatase 1 [Source:HGNC Symbol;Acc:24599] |
Percent Identity: | 79.89 % |
Parental protein coverage: | 70.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VVLSVPAEVTAILLDIEGTTTPIAFVKDILFPYIKENVKEYLQTHWEEEECQQDVSLLRKQAEEDIHLDG |
V.LSVP.EVTAILL.IEGTTT..AFVK..LFPYIK.NVKEYLQTHWEE..CQQ.V.LLRKQAEED.HLD. | |
Retrocopy | VMLSVPTEVTAILLGIEGTTTLMAFVKGVLFPYIKVNVKEYLQTHWEEAACQQFVTLLRKQAEEDSHLDA |
Parental | AVPIPAVSGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQ-GHMWKAAFTAGRMKAEFFEDVVPAVK |
.VPIPA.S.NGVD.LQ.MIQAV.DNV.WQMSLD..T.ALKQ.Q.G.MW.AAFTA..MKAEFFED.VPAVK | |
Retrocopy | FVPIPAASQNGVDGLQKMIQAVADNVDWQMSLD*RTMALKQVQ<GQMWRAAFTAEHMKAEFFEDIVPAVK |
Parental | KWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKI |
KWR.AGMK.YIYSSGSVEAQKLLFGHSTEGDI.ELV.GH..TKI | |
Retrocopy | KWRQAGMKIYIYSSGSVEAQKLLFGHSTEGDIFELVGGHSHTKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005140 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003283 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000015251 | 2 retrocopies | |
Equus caballus | ENSECAG00000019612 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004274 | 1 retrocopy | |
Homo sapiens | ENSG00000145293 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003719 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008619 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011458 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014460 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002502 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014887 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016218 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013987 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001800 | 1 retrocopy |