RetrogeneDB ID: | retro_chof_578 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_123211:3147..3691(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTEN | ||
Ensembl ID: | ENSCHOG00000009252 | ||
Aliases: | None | ||
Description: | phosphatase and tensin homolog [Source:HGNC Symbol;Acc:9588] |
Percent Identity: | 74.6 % |
Parental protein coverage: | 54.84 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | YGEVRTRDKKGVTIPSQRRYVYYYSYLLK-NHLDYRPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVK |
YGEVRT..K.GVTIPSQR..V...S..LK.NHL.YRPV.LLFHKM.FETI..FSG.TCN.QFVVC.L... | |
Retrocopy | YGEVRTTVKMGVTIPSQRHCV--LS*ILK<NHLHYRPVSLLFHKMIFETILVFSGRTCNAQFVVC*LN-- |
Parental | IYSSSGPTRREDKFMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPEETSEKVENGS |
..S.SGPT..EDKF.YFEF...LPVCGDIKVE.FHKQ.KMLKKDKMFHF.V..FFIPGPEET.EKVENGS | |
Retrocopy | -SSNSGPT*QEDKFIYFEFSELLPVCGDIKVELFHKQKKMLKKDKMFHF*VSMFFIPGPEETFEKVENGS |
Parental | LCDQEIDSICSIERADNDKEYLVLTLTKNDLDKANKDKAN-RYFSPNFK |
LC.QEIDSICSIE.ADNDKE.LV.TLT...LDK.NKDKAN...FSPNFK | |
Retrocopy | LCGQEIDSICSIEHADNDKECLVHTLTIIYLDKTNKDKAN<LVFSPNFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009252 | 1 retrocopy |
retro_chof_578 ,
|
Homo sapiens | ENSG00000171862 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000893 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012141 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002448 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000003709 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010440 | 2 retrocopies |