>retro_chof_641
ACTGAGAACTTTTGCCCTGTAGAAACAGATGGAAGAAGTAAAATGATAATTGAGGAACTGGAGAAGCGAGTCTGGCAAGC
TGGAAAGAAGGGGCAGCACCATTTCTTGTCTGTGACACCTCTGGTACAATTGTGTTGGGAGCCCTTGATCCTCTGGATGA
AATAACTGACATGCATGAGAGGCACAGTCTCTGGCTTCATGGGGATACTTCTTGAGGTAGCTCAGCTTTGATGTCAAGGA
AGCACTGCAAGCTTCAGCATGGCAGCCACAGGGCTGACTATGTGGCCTGGAACCCGTACAAGATGCTGATGTCTGAAATC
CAGTGCTGTACTCTTGTGAAAAAGACAAATCTGACCTTCTTAAGAAATGCTACTCAGTCAAGGCATCGTACCTCTCCAAG
GGGATAAATACTACTATGTCAGCTACAACACAGGAGACAAATCTATCCAATGTAGCAGGAGACCAGATGCATTCAAGTTC
TGAATGACCTGGAAGACCCTGGGCACATTGAGCCTTGAAGAAGGAGTTGATTGTGCTCTTGCTTTATCTAGGTACCTAGT
G
ORF - retro_chof_641 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.98 % |
Parental protein coverage: |
55.52 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | TENVCFVETDGRGKMIPEELEKQVWKARK-EEAAPFLVA-TSGTTVLGAFDPLDEIADICEKHSLWLHVD |
| TEN.C.VETDGR.KMI.EELEK.VW.A.K.E.AAPFLV..TSGT.VLGA.DPLDEI.D..E.HSLWLH.D |
Retrocopy | TENFCPVETDGRSKMIIEELEKRVWQAGK<EGAAPFLVCDTSGTIVLGALDPLDEITDMHERHSLWLHGD |
|
Parental | ASWGGSALMSRKHRKLLHGIHRADS-ACNPH-MLMA-IQCCALLVK-DKSFLFSIKKCCSAQASYL-FQQ |
| .S.G.SALMSRKH.KL.HG.HRAD..A.NP..MLM..IQCC.L..K.DKS.L...KKC.S..ASYL..Q. |
Retrocopy | TS*GSSALMSRKHCKLQHGSHRADYVAWNPYKMLMSEIQCCTLVKK<DKSDL--LKKCYSVKASYL<LQG |
|
Parental | DKFYDVSYDTGDKPIQCSRRADAFKFWMTWKALGTLGLEERVNHALALSRYLV |
| DK.Y.VSY.TGDK.IQCSRR.DAFKF.MTWK.LGTL.LEE.V..ALALSRYLV |
Retrocopy | DKYYYVSYNTGDKSIQCSRRPDAFKF*MTWKTLGTLSLEEGVDCALALSRYLV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_641 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.