RetrogeneDB ID: | retro_cpor_1294 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_66:9587067..9587713(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZC3H15 | ||
Ensembl ID: | ENSCPOG00000012965 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.04 % |
Parental protein coverage: | 50.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPPKKQAQAGGSKKAEQK-KKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKL |
.PPKKQAQAGGSKKAEQK.KKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNP.QVAQSEAEKKL | |
Retrocopy | VPPKKQAQAGGSKKAEQK<KKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPCQVAQSEAEKKL |
Parental | KKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYID |
KKDDKKKELQELNEL.KPVVAAQKISKGADPKSVVCAFFKQGQC.KGDKCKFSHDLTLERKCEKRSVYID | |
Retrocopy | KKDDKKKELQELNELLKPVVAAQKISKGADPKSVVCAFFKQGQCRKGDKCKFSHDLTLERKCEKRSVYID |
Parental | ARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKH-FLEAIENNKYGWFWVCPGGGDNCMYR |
ARDEELEKDTMDNWDEK.LEEVVNKKHGEA.K.....QIVCKH.FLEAIENNKYGWFWVCPGGGDNCMYR | |
Retrocopy | ARDEELEKDTMDNWDEKQLEEVVNKKHGEAGKXXXXXQIVCKH<FLEAIENNKYGWFWVCPGGGDNCMYR |
Parental | HALPPGFV |
HALPPGFV | |
Retrocopy | HALPPGFV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 52 .40 RPM |
SRP017611_kidney | 0 .10 RPM | 48 .68 RPM |
SRP017611_liver | 0 .09 RPM | 32 .12 RPM |
SRP040447_lung | 0 .08 RPM | 31 .95 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 22 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021762 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011958 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005931 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012965 | 2 retrocopies |
retro_cpor_1294 , retro_cpor_919,
|
Dipodomys ordii | ENSDORG00000011664 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001563 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007741 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000027565 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011903 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002182 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000015790 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012717 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005256 | 4 retrocopies | |
Sorex araneus | ENSSARG00000012071 | 1 retrocopy |