>retro_cpor_1391
GTGACCTGGCATTAGCAGCCCTTTGGCTGAGACATCTATATTGGGGTCCTTGGCATCGGCATGAGTGGAAGATCACCAAC
AACACCTTCAGGGTCATGCAGATGAGGGCTGGTGACTCCTGCCATGCCTGAAGCCAGCAGTGCAAGGTGGAGCTTACCTG
TAGGAGGAGCAATAGAGTGGCCCATGTGTCTGAGCCAATCACGTGTGTCTATGTGCTGATGTTGCTAACACCCCTTGCCT
GCCACCCCACTCTCTATTACCCAGCCCTGCTGGGAGCTCTGCAGCACAGGGGCAGGCAGGTGAAGCAGGACCTGTATGGT
GAGCTCATCACCACCCAGGGCCATGAAAAGCTGCAGAGGGAGCTTTTTGAGGACACTGGCTATGTAAAGGCCCCAAGAGA
AAAGAAACCCACACTGCAGGAAGGAGCACCTAGGAGTCTAGGGACTGGGACTCTGTAGAACTACAATCAGGCATGTTCAG
AGCTGTGAGGGGAAACACAGAGTCTCAGCAGTCTTCAAGCCTGTGTGGCAGCCCCACGGGAGGCCCACAGAAACCTCCCA
CACTGAGCACTCAGCCCAACAGTCCCCACAGACATGACTTCAGAGCAACTGTGAGGATCTGGGCTTCTATGGGGACAACT
GATG
ORF - retro_cpor_1391 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
63.06 % |
Parental protein coverage: |
71.24 % |
Number of stop codons detected: |
6 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | VTQHEQTFRWNAYSGVLGIW-HEWEIANNTFVGMWMRDGDSCRARSRQSKVELTCGKNNRLAHVSEPSTC |
| VT.H.Q.F....Y.GVLGI..HEW.I.NNTF..M.MR.GDSC.A.S.Q.KVELTC...NR.AHVSEP.TC |
Retrocopy | VTWH*QPFG*DIYIGVLGIG<HEWKITNNTFRVMQMRAGDSCHA*SQQCKVELTCRRSNRVAHVSEPITC |
|
Parental | VYALTFETPLVCHPHSLLVYPTLPEALQRRWDQVEQDLADELITLQGYEKLLRELFEDAGYLKAPRENEP |
| VY.L...TPL.CHP...L.YP.L..ALQ.R..QV.QDL..ELIT.QG.EKL.RELFED.GY.KAPRE..P |
Retrocopy | VYVLMLLTPLACHP--TLYYPALLGALQHRGRQVKQDLYGELITTQGHEKLQRELFEDTGYVKAPREKKP |
|
Parental | TQQEGTARGLGTETLENCNKARSELTEEIQRLTSL-LNLHGIP-HERPTETSHTEHLAQQS-PTDVTSEQ |
| T.QEG..R.LGT.TL.N.N.A.SEL..E.Q.L.SL...L.G.P.H.RPTETSHTEH.AQQS.PTD.TSEQ |
Retrocopy | TLQEGAPRSLGTGTL*NYNQACSEL*GETQSLSSL<SSLCGSP<HGRPTETSHTEHSAQQS<PTDMTSEQ |
|
Parental | LRGDPGLRGNIL |
| L.G...L.G... |
Retrocopy | L*GSGLLWGQLM |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .35 RPM |
27 .95 RPM |
SRP017611_kidney |
0 .10 RPM |
43 .76 RPM |
SRP017611_liver |
0 .17 RPM |
39 .22 RPM |
SRP040447_lung |
0 .18 RPM |
35 .56 RPM |
SRP040447_skeletal_muscle |
0 .01 RPM |
10 .40 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_1391 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_1391 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.