RetrogeneDB ID: | retro_cpor_146 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:87666386..87666769(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSCPOG00000021695 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIG-EFEIIDDHRAGKIVVNLTGRL |
MV.M.VLADALKSINNAEKRGK.Q.L.R.CSK...RFLTVM.KHGYI..EFEIID..RA....VNLTGRL | |
Retrocopy | MVGMDVLADALKSINNAEKRGKCQILKRLCSKEGIRFLTVM-KHGYIA<EFEIID-LRAXXXXVNLTGRL |
Parental | NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
NK.G.I.PRFDVQ..DL.K.QNNLLPS.QFGFIVLTTSAGIMDHEEA..KHT.G.ILGFFF | |
Retrocopy | NKRGAITPRFDVQMEDLKKRQNNLLPSSQFGFIVLTTSAGIMDHEEAQQKHTEGEILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 59 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 116 .52 RPM |
SRP017611_liver | 0 .00 RPM | 81 .96 RPM |
SRP040447_lung | 0 .00 RPM | 209 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 193 .63 RPM |