RetrogeneDB ID: | retro_cpor_1495 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:18817906..18818356(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSCPOG00000022889 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.77 % |
Parental protein coverage: | 98.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SSSPATVPHP-LKMYTCSRFVFT-PSLVRSTSQLLSRPLSAVVLNRPKTPTDESLSSFAVPHPLTSRVPS |
SSSPA.VPHP.LKM..CS.FV.T.PSLVRST.QLLS.PLSA.VL..PKTPTDESLSSFAVP.PLTS.VPS | |
Retrocopy | SSSPAEVPHP<LKMSMCSSFVST<PSLVRSTFQLLSQPLSAGVLDIPKTPTDESLSSFAVPQPLTSLVPS |
Parental | RSFQTSIISRDIDTAAKFIGAG-AATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA |
.SFQTSIISRDIDTAA.FIGAG.AATVGVAGSGAGIG.VFGSLIIGYARN.SLKQQLF.YA.LG..LSEA | |
Retrocopy | PSFQTSIISRDIDTAATFIGAG<AATVGVAGSGAGIGIVFGSLIIGYARNSSLKQQLFCYAMLGSVLSEA |
Parental | MGLFCLMVAFLILF |
.GLFCLM.AFLILF | |
Retrocopy | TGLFCLMMAFLILF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 44 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 117 .15 RPM |
SRP017611_liver | 0 .00 RPM | 61 .94 RPM |
SRP040447_lung | 0 .00 RPM | 70 .90 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 156 .31 RPM |