RetrogeneDB ID: | retro_cpor_239 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_107:780005..780442(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SYPL1 | ||
Ensembl ID: | ENSCPOG00000009221 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.55 % |
Parental protein coverage: | 58.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | GDYSSSAQFYVTFAVFVFLYCIAALLLYVGYTNLYRDSHKLPMI-DFIVTVVATFLWLVSTSAWAKALT- |
G.YSSS.Q..VTFAV.VFL.C.A.L.LYVG.TNLYRDSHKLP......V.VVA.FLWLVSTSAWAKALT. | |
Retrocopy | GGYSSSTQSSVTFAVLVFLFCMATLPLYVGHTNLYRDSHKLPIL<NSVVNVVAIFLWLVSTSAWAKALT< |
Parental | DIKVASGPRIVQEL-MPCKKSTVICHFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETNLHRPSNTS |
.IKVA.GPRIVQEL..PCK.S.....FGSVTSMGSL...VIFGFL.MILWG.NAWFVYKET.LH..SNTS | |
Retrocopy | SIKVATGPRIVQEL<VPCKQSLIMRRFGSVTSMGSL--TVIFGFLKMILWGRNAWFVYKETGLHSSSNTS |
Parental | APHG-QGGTAAPP |
A.HG.Q.G.A.PP | |
Retrocopy | ASHG<QEGAAPPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 102 .07 RPM |
SRP017611_liver | 0 .00 RPM | 38 .74 RPM |
SRP040447_lung | 0 .00 RPM | 67 .11 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 41 .14 RPM |