RetrogeneDB ID: | retro_cpor_933 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_35:3076115..3076515(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL10 | ||
Ensembl ID: | ENSCPOG00000001642 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.75 % |
Parental protein coverage: | 56.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | SGKTPLEGHVPTWGFN-SVRLPTKDFEVDLLEIG-GSQNLRFYWKEFVNEVDVLVFMVDSADRLRLPWAR |
.GK..L.GH.PTW....SV.LP.K..E.DLLEI.....N..FY.KEFVNEV...VF.VD..D.L...... | |
Retrocopy | AGKPLLKGHTPTWFLS<SVLLPNKNIEGDLLEIR<DNKNMHFYEKEFVNEV---VFLVDMTDHL*RSRVQ |
Parental | QELHKLLDKD-PDLPVVVVANKQDLSEAMSVVELQQELGLQ-AIDNQREIFFLAASIA-PAGSGFEEPGT |
Q.LHK.L.KD.P.LPV.V...KQD...AM.VVEL.QELGLQ.A......IF.L......P....FEEPGT | |
Retrocopy | QKLHKFLGKD<PKLPVLVLSTKQDIRKAMRVVELRQELGLQ<AANG**DIFLLTVRAT<PYETYFEEPGT |
Parental | VHI |
..I | |
Retrocopy | ENI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .15 RPM |
SRP017611_liver | 0 .00 RPM | 0 .96 RPM |
SRP040447_lung | 0 .00 RPM | 2 .72 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 23 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000001642 | 3 retrocopies |
retro_cpor_136, retro_cpor_1479, retro_cpor_933 ,
|
Dasypus novemcinctus | ENSDNOG00000002678 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016961 | 1 retrocopy |