>retro_dmel_25
ATGAATTCCGAAATGGAATTCTCGGATGAGGACCACGGTGACTCGCATCGGTCGCTTCTCACTCACATGAGTTGCGAAAA
TGACAGCGACAGCGAGGACACCTGCACGGAAATCCTTTTGCCGGAAAATTCCAACAGTCCCGAAACGGAGGACTTTGTGT
ACAAGGTCCTTTCGGTGGACCAGATTGTTCAGCATCAGCGTAACATCATCGATGAGGTGAATAATGTCCTGAATTTGCCA
CCGCAAGTCACGCGTATTATCCTAAATCACTTCAAATGGGACAAAGAGAGCTTGTTCGAAAATTATTTCGAGAGCAATCC
GAAGGACTTCTTTCAGCGTGCCCATGTGTTGAATCCCTTTGAGAAGAAGATTGAACGCGAGTCTGCGGCGTCTACATCCT
GTGCCATACCTCAGCTCTGTGGCATTTGCTTTTGTTCTTGCGATGAGCTCATAGGTTTGGGCTGTGGTCACAACTTTTGT
GCCGCCTGCTGGAAACAATATTTGGCCAATAAGACGTGTAGCGAGGGCTTGGCCAATACCATCAAATGTCCAGCGGCCAA
CTGCGAGATCCTGGTGGATTATATATCCTTTCTGAAACTTGCCGATGATTCAGAGGTTGTCGAGCGATATCAGCAGCTCA
TCACCAACACGTTTGTGGAATGCAACATGCTGATGCGATGGTGCCCCGCCCCCAATTGCAGCCATGCCGTCAAGGCCGTT
TGTGCTGAACCACGAGCAGTCCTTTGCAAATGTGGGCATGAGTTTTGCTTTGCTTGTGGCGAAAATTGGCATGAACCCGC
CAGCTGCAGTTCGCTCAAGAAGTGGGTGAAAAAATGTCTTGAGGACTCGGAGACATCGAATTGGATTGCCCAGAACACGA
AGGAGTGTCCCAAGTGCAATGTTACCATCGAGAAGGATGGTGGTTGCAATCATATGGTATGCAAGAATCCATCCTGCCGT
TATGATTTCTGCTGGGTATGCCTTGGATCCTGGGAGCCACATGGTTCGTCCTGGTACAGTTGCAATCGCTTCGACGAGGA
GGAAGCGAAACAGGCCAGATTGGCTCAGCAAAAATATCGCTCTTCAATGGCCCGATATCTGCACTATTACAATCGTTATA
GCAACCACATGCAAAGTTTGAAAATGGAAAATAAATTATATTCCAATATTCAGGCCAAAATGGATGACATGCAGGAGGAG
ATGAGCTGGATTGAGGTTCAGTTTCTGCGTGATGCCGTCGATGTCTTATGCCAATGTCGAACCACTCTGATGTACAGCTA
TGTGTTTGCATTTTATTTGATGAACAACAATCAGAAGATCATATTCGAGGATAATCAGAAGGACATGGAAATGGCCACAG
AAAAGCTGTCCGAGTGCTTGGAGCGAGAGATCACTGTCAAGAATATCTATGAAGTTAAACAAAAGGTTCTGGACTTATCG
CACTATTGCCAAAAACGACGACATGTCCTCCTTTGCCATGTGAGGGAGGGATACGAAAATGACTGGTGGGAATTTAAAGA
AGAGACCACTACATAA
ORF - retro_dmel_25 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
66.04 % |
Parental protein coverage: |
73.76 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | CEICFSQLPPDSMAGLECGHRFCMPCWHEYLSTKIVAEGLGQTISCAAHGCDILVDDVTVANLVTDARVR |
| C.ICF.....D...GL.CGH.FC..CW..YL..K...EGL..TI.C.A..C.ILVD......L..D..V. |
Retrocopy | CGICFCSC--DELIGLGCGHNFCAACWKQYLANKTCSEGLANTIKCPAANCEILVDYISFLKLADDSEVV |
|
Parental | VKYQQLITNSFVECNQLLRWCPSVDCTYAVKVPYAEPRRVHCKCGHVFCFACGENWHDPVKCRWLKKWIK |
| ..YQQLITN.FVECN.L.RWCP...C..AVK...AEPR.V.CKCGH.FCFACGENWH.P..C..LKKW.K |
Retrocopy | ERYQQLITNTFVECNMLMRWCPAPNCSHAVKAVCAEPRAVLCKCGHEFCFACGENWHEPASCSSLKKWVK |
|
Parental | KCDDDSETSNWIAANTKECPRCSVTIEKDGGCNHMVCKNQNCKNEFCWVCLGSWEPHGSSWYNCNRYDED |
| KC..DSETSNWIA.NTKECP.C.VTIEKDGGCNHMVCKN..C...FCWVCLGSWEPHGSSWY.CNR.DE. |
Retrocopy | KCLEDSETSNWIAQNTKECPKCNVTIEKDGGCNHMVCKNPSCRYDFCWVCLGSWEPHGSSWYSCNRFDEE |
|
Parental | EAKTARDAQEKLRSSLARYLHYYNRYMNHMQSMKFENKLYASVKQKMEEMQQHNMSWIEVQFLKKAVDIL |
| EAK.AR.AQ.K.RSS.ARYLHYYNRY.NHMQS.K.ENKLY.....KM..MQ...MSWIEVQFL..AVD.L |
Retrocopy | EAKQARLAQQKYRSSMARYLHYYNRYSNHMQSLKMENKLYSNIQAKMDDMQEE-MSWIEVQFLRDAVDVL |
|
Parental | CQCRQTLMYTYVFAYYLKKNNQSMIFEDNQKDLESATEMLSEYLERDITSENLADIKQKVQDKYRYCEKR |
| CQCR.TLMY.YVFA.YL..NNQ..IFEDNQKD.E.ATE.LSE.LER.IT..N....KQKV.D...YC.KR |
Retrocopy | CQCRTTLMYSYVFAFYLMNNNQKIIFEDNQKDMEMATEKLSECLEREITVKNIYEVKQKVLDLSHYCQKR |
|
Parental | CSVLLKHVHEGYDKEWWEYTE |
| ..VLL.HV.EGY...WWE..E |
Retrocopy | RHVLLCHVREGYENDWWEFKE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
1 EST(s) were mapped to retro_dmel_25 retrocopy
EST ID |
Start |
End |
Identity |
Match |
Mis-match |
Score |
BF506265 |
10406103 |
10406811 |
99.8 |
706 |
2 |
704 |
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_25 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.