RetrogeneDB ID: | retro_dnov_1013 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_135020:241..678(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000013931 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.27 % |
Parental protein coverage: | 52.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MENIENSVDSKSIKNSETKISLGSKSV-DSGISLDSSYKMDYPEMGLCIIINNKNFHKSTGMASRSGTDV |
MENIENS.DSKSIKNSETKI.LGS.S..DS.ISLDSS.K..YPEMGLCIIINNKNFHKSTGMAS.SGTDV | |
Retrocopy | MENIENSMDSKSIKNSETKILLGSESM<DSRISLDSSCKLGYPEMGLCIIINNKNFHKSTGMASWSGTDV |
Parental | DAANLRQTFGNLNYQVRNKNDLTREEIMELLRNVSKEDHSKRSSFICVILSHGEEGIIFGTDGPIDLKKL |
DAANLR.TFGNL.YQ..N.N.LT.EE.MELL.NVSK.D.SK..SFICV.LSHG.EGIIFG..GP.DLKKL | |
Retrocopy | DAANLRETFGNLKYQGSNRNYLTSEESMELLCNVSKADRSKGRSFICVNLSHGKEGIIFGSNGPLDLKKL |
Parental | TSFFRGD |
TSFF.GD | |
Retrocopy | TSFFGGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 14 .20 RPM |
SRP012922_cerebellum | 0 .00 RPM | 6 .60 RPM |
SRP012922_heart | 0 .00 RPM | 1 .86 RPM |
SRP012922_kidney | 0 .00 RPM | 5 .20 RPM |
SRP012922_liver | 0 .00 RPM | 4 .80 RPM |
SRP012922_lung | 0 .00 RPM | 7 .18 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 4 .15 RPM |
SRP012922_spleen | 0 .00 RPM | 11 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005740 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012511 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000001797 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013931 | 1 retrocopy |
retro_dnov_1013 ,
|
Dipodomys ordii | ENSDORG00000002554 | 2 retrocopies | |
Homo sapiens | ENSG00000164305 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025155 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004809 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012053 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010895 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005985 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015236 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016640 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010475 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000009178 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003865 | 2 retrocopies |