RetrogeneDB ID: | retro_dnov_1310 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_17984:12716..13149(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPA1 | ||
Ensembl ID: | ENSDNOG00000014861 | ||
Aliases: | None | ||
Description: | pyrophosphatase (inorganic) 1 [Source:HGNC Symbol;Acc:9226] |
Percent Identity: | 81.38 % |
Parental protein coverage: | 51.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QYISPFHDIPIYADKXXXXXXXXXXXXXXXXXXIATKDPLNPIKQDV-KKGKLRYVANLFPYKGYIWNYG |
Q.ISP.HDIPIYADK..................IATKDPLNPIKQD..KKGKLRYVANLFPYKGYIWNYG | |
Retrocopy | QGISPLHDIPIYADKDVFHMVVEVPCWPNAKMEIATKDPLNPIKQDE>KKGKLRYVANLFPYKGYIWNYG |
Parental | AIPQTWEDPGHNDKHTGCSGDNDPIDVCEIGSKVCARGEIIGVKVLGILAMIDEGETDWKVIAINVEDPD |
AIPQTWEDPGHNDKHTGC.GDND.IDVCE.G.KVCARGEIIGVKVLGILAMIDEGETDWKVIAINVED.D | |
Retrocopy | AIPQTWEDPGHNDKHTGCCGDNDLIDVCETGGKVCARGEIIGVKVLGILAMIDEGETDWKVIAINVEDSD |
Parental | AANYN |
AANYN | |
Retrocopy | AANYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 29 .17 RPM | 62 .04 RPM |
SRP012922_cerebellum | 7 .15 RPM | 11 .96 RPM |
SRP012922_heart | 4 .64 RPM | 4 .64 RPM |
SRP012922_kidney | 5 .20 RPM | 4 .65 RPM |
SRP012922_liver | 59 .91 RPM | 116 .41 RPM |
SRP012922_lung | 12 .22 RPM | 22 .15 RPM |
SRP012922_quadricep_muscle | 11 .60 RPM | 14 .19 RPM |
SRP012922_spleen | 5 .84 RPM | 9 .84 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014033 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014861 | 1 retrocopy |
retro_dnov_1310 ,
|
Equus caballus | ENSECAG00000018686 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004048 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016098 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006788 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029405 | 1 retrocopy |