RetrogeneDB ID: | retro_dnov_1336 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_183342:3686..4166(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MXI1 | ||
Ensembl ID: | ENSDNOG00000002479 | ||
Aliases: | None | ||
Description: | MAX interactor 1, dimerization protein [Source:HGNC Symbol;Acc:7534] |
Percent Identity: | 69.51 % |
Parental protein coverage: | 53.9 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | STHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERK--SQHQLENLEREQ |
ST....EKN....LRLCLE.LKVL.PLGPDCTRHT.LG.LNKAKA.IKKLEEA.RK..SQ.QL.NL..EQ | |
Retrocopy | STYYKPEKNQGVRLRLCLECLKVLLPLGPDCTRHTSLGSLNKAKAPIKKLEEAQRKSQSQRQLKNLAGEQ |
Parental | RFLKRRL-EQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVE-STEFSHGEVDNISTTSISDIDDH |
.F.K.RL.EQ.QGPQ.ME....DSIGST.SSD.SD.EREEIEVD.E..TE.S.GEVDNI..TSISD..DH | |
Retrocopy | SFFKQRL<EQPQGPQAME*V*RDSIGSTTSSDLSDPEREEIEVDIE<NTEVSQGEVDNINPTSISDMEDH |
Parental | SSLQSIGSDEGYSS-ASVKLSFTS |
.SLQS....EG.SS..SVKLSFTS | |
Retrocopy | CSLQSLAREEGHSS<SSVKLSFTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 17 .70 RPM |
SRP012922_cerebellum | 0 .00 RPM | 28 .04 RPM |
SRP012922_heart | 0 .00 RPM | 9 .05 RPM |
SRP012922_kidney | 0 .00 RPM | 13 .96 RPM |
SRP012922_liver | 0 .00 RPM | 8 .98 RPM |
SRP012922_lung | 0 .00 RPM | 18 .17 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 23 .02 RPM |
SRP012922_spleen | 0 .00 RPM | 37 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006556 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000022901 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002479 | 2 retrocopies |
retro_dnov_1336 , retro_dnov_668,
|
Mus musculus | ENSMUSG00000025025 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022128 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003400 | 2 retrocopies |