RetrogeneDB ID: | retro_dnov_1347 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_18485:9650..10322(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA3 | ||
Ensembl ID: | ENSDNOG00000004077 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532] |
Percent Identity: | 94.2 % |
Parental protein coverage: | 87.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNV |
MSSIGTGYDLSASTFSP.GR.FQVEYAMKAVENSSTAIGIRCKD.VVFGVEKLVLSKLYEEGSNKRLFNV | |
Retrocopy | MSSIGTGYDLSASTFSPHGRNFQVEYAMKAVENSSTAIGIRCKDDVVFGVEKLVLSKLYEEGSNKRLFNV |
Parental | DRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS |
DRH.GM.VAGLLADARSLADIAREEASNFRSNFGYNIPLK.LADRVAMYVHA.TLYSAVRPFGCSF.LGS | |
Retrocopy | DRHAGMVVAGLLADARSLADIAREEASNFRSNFGYNIPLKYLADRVAMYVHACTLYSAVRPFGCSFVLGS |
Parental | YSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAF |
YSVNDGAQLYMIDPSGVSYG.WGCAIGKARQAAKTEIEKLQMKEMT.RDVVKEVAKIIYI..DEVKDKAF | |
Retrocopy | YSVNDGAQLYMIDPSGVSYGCWGCAIGKARQAAKTEIEKLQMKEMTSRDVVKEVAKIIYIARDEVKDKAF |
Parental | ELELSWVGELTKGR |
ELELSWVGEL.KGR | |
Retrocopy | ELELSWVGELSKGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 46 .09 RPM |
SRP012922_cerebellum | 0 .14 RPM | 24 .19 RPM |
SRP012922_heart | 0 .00 RPM | 32 .72 RPM |
SRP012922_kidney | 0 .00 RPM | 42 .71 RPM |
SRP012922_liver | 0 .00 RPM | 30 .81 RPM |
SRP012922_lung | 0 .00 RPM | 32 .53 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 33 .41 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .95 RPM |