>retro_dnov_1384
ATGGTGCTGGGGGGCTGCCCGGTGAGTGACTTACTTCTGTGCAGCCAGGCGGCCTTACTGCTGGGGAATCTGCTTCTGCT
GCATTGCGTCTCTCGGAGCCACTCGCACAATGCTACTGCCGAGCCCGAGCTCACACCCTCTGGCGCTGCCCACCTGGAGG
GTTTGGCCAGAGTGCTGAGCTGGGAATATGGCGACCCTCCACTCTCCTCTCATCCTTTGCTTACTTGCCTGATGAATTTA
TAGATTGTGAAGACCCAGTGGATCATGTGGGAAATGCGACTGCATCCCAGGATCTCGGTGACGGTGGTCTCAGTTTTGGT
GGCCAGGTCTATGGTGATGTGCAGCACACTTCAGTCCAGTGCCGGGCCCTGGAGGAATAGAGTGTGCCAGCCCTAGGATC
CTCCTACGAGAAAATAAACCTGTATTAGGTATACGGGACGCTACTTCATA
ORF - retro_dnov_1384 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
77.27 % |
Parental protein coverage: |
70.56 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MVLGGCPVSYLLLCGQAALLLGNLLLLHCVSRSHSHNATAEPELTPSGAAHPGGLGGAPSWKYGD-PHSP |
| MVLGGCPVS.LLLC.QAALLLGNLLLLHCVSRSHSHNATAEPELTPSGAAH..GL....SW.YGD.P... |
Retrocopy | MVLGGCPVSDLLLCSQAALLLGNLLLLHCVSRSHSHNATAEPELTPSGAAHLEGLARVLSWEYGD<PSTL |
|
Parental | VILCSYLPDEFIECEDPVDHVGNATAFQELGYGCVKFGGQAYDDVERTSVQCRALD-GIECASPRIFLRE |
| .....YLPDEFI.CEDPVDHVGNATA.Q.LG.G...FGGQ.Y.DV..TSVQCRAL..GIECASPRI.LRE |
Retrocopy | LSSFAYLPDEFIDCEDPVDHVGNATASQDLGDGGLSFGGQVYGDVQHTSVQCRALE<GIECASPRILLRE |
|
Parental | NKP-CIKYTGHYFI |
| NKP.CI.YTG.YFI |
Retrocopy | NKP<CIRYTGRYFI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
8 .56 RPM |
SRP012922_cerebellum |
0 .00 RPM |
22 .68 RPM |
SRP012922_heart |
0 .23 RPM |
4 .41 RPM |
SRP012922_kidney |
0 .00 RPM |
7 .94 RPM |
SRP012922_liver |
0 .00 RPM |
10 .37 RPM |
SRP012922_lung |
0 .00 RPM |
15 .12 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
13 .67 RPM |
SRP012922_spleen |
0 .00 RPM |
20 .49 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1384 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.