RetrogeneDB ID: | retro_dnov_1534 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_22863:7506..7891(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF114 | ||
Ensembl ID: | ENSDNOG00000009113 | ||
Aliases: | None | ||
Description: | ring finger protein 114 [Source:HGNC Symbol;Acc:13094] |
Percent Identity: | 75.57 % |
Parental protein coverage: | 56.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | FLSKIRAHVATCSKYQNYIMEGVKATTKDASLQPRNVPNRYTFPCPYC-PEKNFDQEGLVEHCKLSHSTD |
FLS.IRAH.A.C.KYQNYI..GVKAT.KD.SLQPRN..N..TFPCP...PEKNFDQEGL.EH.K.SHSTD | |
Retrocopy | FLSRIRAHAAICCKYQNYIIDGVKATMKDESLQPRNISNH*TFPCPHR<PEKNFDQEGLGEHYKSSHSTD |
Parental | TKSVVCPICASMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVD-EEDMMNQVLQRSIID |
T..V.CPICA..PWGDP.Y.SANFIEHIQRRH.FSYDTF..YDVD..EDMMN.VLQ.SIID | |
Retrocopy | TRFVICPICALTPWGDPSYHSANFIEHIQRRHRFSYDTFTHYDVD<LEDMMNWVLQHSIID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 16 .72 RPM |
SRP012922_cerebellum | 0 .27 RPM | 12 .92 RPM |
SRP012922_heart | 0 .00 RPM | 8 .59 RPM |
SRP012922_kidney | 0 .00 RPM | 13 .42 RPM |
SRP012922_liver | 0 .00 RPM | 12 .23 RPM |
SRP012922_lung | 0 .15 RPM | 19 .24 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 9 .35 RPM |
SRP012922_spleen | 0 .00 RPM | 31 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009113 | 2 retrocopies |
retro_dnov_1534 , retro_dnov_1557,
|
Microcebus murinus | ENSMICG00000011155 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003953 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000004732 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000004117 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001827 | 1 retrocopy |