RetrogeneDB ID: | retro_dnov_1587 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_240286:541..863(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF7 | ||
Ensembl ID: | ENSDNOG00000005961 | ||
Aliases: | None | ||
Description: | ring finger protein 7 [Source:HGNC Symbol;Acc:10070] |
Percent Identity: | 74.55 % |
Parental protein coverage: | 96.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EGEEPGALSSHSG-SAGSKSGADKMFSLKKWNAVAMRS-RDVECDTCAICRVQVMDACLRCQAENKQEDC |
..E.P..LSSH...S.GSK..AD.MF.LKKW..VAM.S..DVE.DTC.ICRVQVMDA.LRCQAENKQEDC | |
Retrocopy | DSEDPSTLSSHYR<STGSK*EADTMFCLKKWSSVAMWS<LDVESDTCTICRVQVMDAHLRCQAENKQEDC |
Parental | VVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK |
.VVWG.CNHSFHNCCMSLWVKQN.R.PLCQ.DW.VQRIG. | |
Retrocopy | IVVWGDCNHSFHNCCMSLWVKQNHRFPLCQ*DWIVQRIGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 13 .42 RPM |
SRP012922_cerebellum | 0 .00 RPM | 14 .02 RPM |
SRP012922_heart | 0 .00 RPM | 11 .37 RPM |
SRP012922_kidney | 0 .00 RPM | 15 .06 RPM |
SRP012922_liver | 0 .00 RPM | 8 .20 RPM |
SRP012922_lung | 0 .00 RPM | 15 .43 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 26 .65 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .28 RPM |