RetrogeneDB ID: | retro_dnov_1650 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_25597:38731..39491(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA3 | ||
Ensembl ID: | ENSDNOG00000004077 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532] |
Percent Identity: | 91.8 % |
Parental protein coverage: | 99.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SSIGTGYDLSASTFSPDGRVF-QVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNV |
SSI.TGYDLSASTF.PDGRVF.QVEYAMKAVENSSTAIGIRC.DGVVFGVEKLVLSKLYEEGSNKRLFNV | |
Retrocopy | SSIHTGYDLSASTFPPDGRVF<QVEYAMKAVENSSTAIGIRCIDGVVFGVEKLVLSKLYEEGSNKRLFNV |
Parental | DRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVR-PFGCSFMLG |
DRH.GM.VAG.L.DARSLADIAREEASNFRSNFG.NIPLKHLADRV.MYVHA.TLYSAV..PFGCSF.LG | |
Retrocopy | DRHAGMVVAGVLTDARSLADIAREEASNFRSNFGCNIPLKHLADRVIMYVHACTLYSAVN<PFGCSFTLG |
Parental | SYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKA |
SY.VNDGAQL..I.PSGVSYGYWGCA.GKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKA | |
Retrocopy | SYIVNDGAQLHRIEPSGVSYGYWGCALGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKA |
Parental | FELELSWVGELTKGRHEIVPKDIREEAEKYAKESLKEEDESDDNNM |
FELELSWVGEL.KGRHEIVPKDIREEAEKYAKESLKEEDESDD.NM | |
Retrocopy | FELELSWVGELSKGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 4 .28 RPM | 46 .09 RPM |
SRP012922_cerebellum | 2 .75 RPM | 24 .19 RPM |
SRP012922_heart | 3 .48 RPM | 32 .72 RPM |
SRP012922_kidney | 5 .48 RPM | 42 .71 RPM |
SRP012922_liver | 2 .17 RPM | 30 .81 RPM |
SRP012922_lung | 4 .43 RPM | 32 .53 RPM |
SRP012922_quadricep_muscle | 3 .46 RPM | 33 .41 RPM |
SRP012922_spleen | 5 .61 RPM | 43 .95 RPM |