RetrogeneDB ID: | retro_dnov_1881 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_3484:61447..61809(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000025217 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZNRD1 | ||
Ensembl ID: | ENSDNOG00000015720 | ||
Aliases: | None | ||
Description: | zinc ribbon domain containing 1 [Source:HGNC Symbol;Acc:13182] |
Percent Identity: | 65.08 % |
Parental protein coverage: | 97.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SIMDPAETGS-SFQSDLDFCPDCGSVLPLPGAQDSVICTRCGLSINVRDFEGKVVKTSFVFHKLGTAVPA |
S..D.AET.S.S.Q.D.D..PDCG....LPGA.DSVICTRC.LS.NVRDFE...VKTSF.FHKL..AVP. | |
Retrocopy | STVDVAETCS<SLQWDRDSSPDCGRSC-LPGARDSVICTRCALSVNVRDFERSMVKTSFAFHKLRAAVPV |
Parental | AVE-QGPEFQGPVVDRRCPRCGHEGMAYHTRQMR-SADEGQTVFYTCTNCRFQEKE |
AVE.Q.P...GP..DRRC.R.G..GMA.H.RQM..SADEGQTV.YTCT.CR.Q.K. | |
Retrocopy | AVE>QSPRW-GPAMDRRCLRRGPAGMAQHSRQMA<SADEGQTVLYTCTDCRLQKKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 35 .00 RPM |
SRP012922_cerebellum | 0 .00 RPM | 23 .64 RPM |
SRP012922_heart | 0 .00 RPM | 18 .79 RPM |
SRP012922_kidney | 0 .00 RPM | 38 .33 RPM |
SRP012922_liver | 0 .00 RPM | 21 .83 RPM |
SRP012922_lung | 0 .00 RPM | 34 .36 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 23 .71 RPM |
SRP012922_spleen | 0 .00 RPM | 42 .81 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007328 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015720 | 9 retrocopies |
retro_dnov_1020, retro_dnov_1103, retro_dnov_1472, retro_dnov_1726, retro_dnov_1798, retro_dnov_1881 , retro_dnov_2400, retro_dnov_2420, retro_dnov_933,
|
Myotis lucifugus | ENSMLUG00000007272 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016023 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007474 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000779 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009716 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001554 | 1 retrocopy |