RetrogeneDB ID: | retro_dnov_1905 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_36117:4717..5743(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1GALT1 | ||
Ensembl ID: | ENSDNOG00000017353 | ||
Aliases: | None | ||
Description: | core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 [Source:HGNC Symbol;Acc:24337] |
Percent Identity: | 86.01 % |
Parental protein coverage: | 94.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MASKSWLNVLIFLCGSAVGFFLCSQLFSTLLEEQSDTQPNILHNDPHARHSDDNGQHHLEGQMNFNADVN |
MA.K.WLN.LI.LCGSA.GFF.CSQL.S..LEEQSDTQPNILHNDPH.R.SDDN.Q.HLEGQ.N..A... | |
Retrocopy | MAFKCWLNFLILLCGSAIGFF*CSQLVSVFLEEQSDTQPNILHNDPHTRYSDDNRQNHLEGQKNVSAGAS |
Parental | QHKDEDTDIAEKLYQKVKILCWVMTGPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPTVGLKTKEGR |
QHKDE..DIAEKLYQKVKILCWVMTGPQNLEKKAKHVKATWA..CNKVLFMSS..NKDFPTVGLKT.EGR | |
Retrocopy | QHKDEGADIAEKLYQKVKILCWVMTGPQNLEKKAKHVKATWAKHCNKVLFMSSK-NKDFPTVGLKTREGR |
Parental | DQLYWKTIKAFQYVYDHYLEDADWFMKADDDTYVILDNLRWLLSKYDPQNPIYFGRRFKPFVKQGYMSGG |
DQLYWKT.KAF.YVYDH.LED.DWFMKADDDTYVILDNLRWLL.KYDP..PIYFGRRFKPFVKQGYMSGG | |
Retrocopy | DQLYWKTVKAFRYVYDHFLEDTDWFMKADDDTYVILDNLRWLLPKYDPEKPIYFGRRFKPFVKQGYMSGG |
Parental | AGYVLSKEALKRFVDAFKTEKCTHSSSIEDLALGRCMEIMNVEAGDSRDTTGKETFHPFVPEHHLIKGYL |
AGYVLSKEALKRFVDAFKT.KCTHSSSIEDLALGRCME..NVEAGDSRDTT.KETFHPF.P..HLIKGYL | |
Retrocopy | AGYVLSKEALKRFVDAFKTYKCTHSSSIEDLALGRCMEFINVEAGDSRDTTRKETFHPFAPKYHLIKGYL |
Parental | PKTFWYWNYNYYPTVEGPGCCSDLAISFHYVDPLTMYELEYLVYHLRPY-YLYRY-PALPENV |
PKT.WYW.YNYY..VEGPGCCSDLAISFHYVDPLTMYELEYL.YHLRPY.YLYRY.PALPEN. | |
Retrocopy | PKTSWYWKYNYYLAVEGPGCCSDLAISFHYVDPLTMYELEYLIYHLRPYGYLYRYQPALPENI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 12 .64 RPM | 109 .10 RPM |
SRP012922_cerebellum | 0 .00 RPM | 1 .37 RPM |
SRP012922_heart | 0 .00 RPM | 2 .09 RPM |
SRP012922_kidney | 0 .00 RPM | 18 .07 RPM |
SRP012922_liver | 0 .15 RPM | 5 .73 RPM |
SRP012922_lung | 0 .15 RPM | 3 .51 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1 .38 RPM |
SRP012922_spleen | 0 .57 RPM | 9 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000225 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000017353 | 2 retrocopies |
retro_dnov_1801, retro_dnov_1905 ,
|
Homo sapiens | ENSG00000106392 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000063 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014789 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016338 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026002 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012847 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000001562 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018925 | 2 retrocopies |