RetrogeneDB ID: | retro_dnov_2190 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_54229:7785..8811(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KLHL12 | ||
Ensembl ID: | ENSDNOG00000010436 | ||
Aliases: | None | ||
Description: | kelch-like family member 12 [Source:HGNC Symbol;Acc:19360] |
Percent Identity: | 77.3 % |
Parental protein coverage: | 60.74 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | LTASTMEILLDFVYTETVHVTVENVQELLPAACLLQLKGVKQACCEFLESQLDPSNCLGIRDFAETHNCV |
LTASTMEILL.FVY.ETV.VT.ENVQE.LP.ACLLQLKGVKQACCEFLES.L.PSNCLG.RDFA.T.N.V | |
Retrocopy | LTASTMEILLGFVYKETVRVTMENVQERLPVACLLQLKGVKQACCEFLESLLGPSNCLGVRDFAVTKNSV |
Parental | DLMQAAEVFSQKHFPEVVQHEEFILLSQGEVEKLIKCDEIQVDSEEPVFEAVINWVKHAKKEREESLPDL |
DLMQAAEVFSQKHFPE.VQ.EE.ILLSQG..EKL.KC.EIQVD..EP.FEAVI.W.KHAKKEREESLP.. | |
Retrocopy | DLMQAAEVFSQKHFPEMVQYEECILLSQGKEEKLMKCNEIQVD-PEPGFEAVISWGKHAKKEREESLPGM |
Parental | LQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRS-QMQGPR-TRARLGANEVLLVV |
LQYV.MPLLTPR.ITDV.DA.PFI..SLQ.RDLVD.AKKFHL.....S.....PR.T.A.LGANEVLLV. | |
Retrocopy | LQYVGMPLLTPRWITDVTDAGPFIHYSLQPRDLVDKAKKFHLS*TVES<RCKDPR<TSAPLGANEVLLVI |
Parental | GGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADED |
G.F.S.QSP.D.VEKYDPKTQEWSFLPSIT.KR.Y.ASVSLH.RIYV.GGYDG.SRLSSVE.LD.TADED | |
Retrocopy | GSFRS*QSPFDMVEKYDPKTQEWSFLPSIT*KR*YAASVSLHNRIYVTGGYDGCSRLSSVEYLDCTADED |
Parental | GVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-REGAGLVV |
G.W.SVAP.NV...LA.ATTLGD.IYVSG.FD.SR.HT..E.YDPN.DQWSMLGDMQTA.REGA.L.V | |
Retrocopy | GIWNSVAPVNV**RLARATTLGD-IYVSGDFDESRCHTGLEQYDPNFDQWSMLGDMQTA<REGADLPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 35 .78 RPM |
SRP012922_cerebellum | 0 .00 RPM | 25 .98 RPM |
SRP012922_heart | 0 .00 RPM | 8 .82 RPM |
SRP012922_kidney | 0 .00 RPM | 22 .18 RPM |
SRP012922_liver | 0 .00 RPM | 7 .90 RPM |
SRP012922_lung | 0 .00 RPM | 18 .79 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 13 .85 RPM |
SRP012922_spleen | 0 .00 RPM | 33 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006231 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010436 | 1 retrocopy |
retro_dnov_2190 ,
|
Echinops telfairi | ENSETEG00000007800 | 2 retrocopies | |
Homo sapiens | ENSG00000117153 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017849 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018103 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014771 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000343 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001861 | 1 retrocopy |