>retro_dnov_2242
ATTAAGTTCAGCAATTTTTTAATATACTAGATACCTGAAAAAGTATGCTTTGGTAGGCTTTGGTTTGGCCCAGGGAACCC
ATGATATGAAAATAGAGGTTCTGAAATTTGTCCAGTCTTAGACTCAACAGGAAAGTTTTTCACAAAATAAGTCCCATATA
ATCACAGGAAAGAAGATTTCATTGAGTGGCCCATCATCTAAAGAGCTGAATCAGCAGCGTTTCACAAAAGCATCTGTTAA
AAGGCCCCATGCAAATGCACAAATTTATATTAAACAAGGAAAAGATGGAAAGGAGGTATCTGTAGGCCTTTCTATCCAGG
GCTCTGTTTTTGGAGAAAGAAATTTCAATACGCACAGCTCCATTTCACATGAGAGCCCTGCAGTGAAATTTATGAAGCAG
TCAAAGACTGTGGATATACTATCTAGAAAGTTAGCAACAAAAAAGAAGGCTATTTCTACAACAGTTGTAAACAGTGGTGT
GATAAGGAAAACTGCCAGTTCTTGCCCAGCTAACCTGATCTGTGACTTTTTTGCAACAGATAAAGTTTGCAGCATTTACC
TTTCAAGGCAGCAGCAAGTTGTCCCTAGGGCAGATACACCAAGATTCAGAATGCCAGAAGTTTTAAACAAAGTGCCCCAA
TCAAACCACTGCAATTGACATGTGGACTGCATGTATCATATTCCTTCCCTTGCTTAGTGGACAATATCATTTTATAAAGC
AACTGATGATTTAACTGCTTTGGCTCAAATTATGACAATTCATGGATCCAGGGAAACTATCCAGGCTACTAAAACTTTTG
GCAAGTCAATATTATGTAGCAAAGAAGTCCCAGCAAATGCCTTGAGAAAACTCTGTGAGACACTCTGGGATATAGACACT
AAAACTTCCAAATTAACAAGTGCAATACAAGGACCTACTTCTTAT
ORF - retro_dnov_2242 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.39 % |
Parental protein coverage: |
53.95 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | VKPSNFL-YNRCLKKYALVDFGLAQGTHDTKIELLKLVQSEAQQQSFSQNKSHVITGNKISLSGPAPKDL |
| .K.SNFL.Y.R.LKKYALV.FGLAQGTHD.KIE.LK.VQS..QQ.SFSQNKSH.ITG.KISLSGP..K.L |
Retrocopy | IKFSNFL>YTRYLKKYALVGFGLAQGTHDMKIEVLKFVQS*TQQESFSQNKSHIITGKKISLSGPSSKEL |
|
Parental | NQQPITKASVKRPYTNAQIHIKQGKDGKEGSVGLSAQRSVFGERNFNIHSSISHESPAVKLMKQSKTVDV |
| NQQ..TKASVKRP..NAQI.IKQGKDGKE.SVGLS.Q.SVFGERNFN.HSSISHESPAVK.MKQSKTVD. |
Retrocopy | NQQRFTKASVKRPHANAQIYIKQGKDGKEVSVGLSIQGSVFGERNFNTHSSISHESPAVKFMKQSKTVDI |
|
Parental | LSRKLAT-KKTISTKVINSGVMRKTASSCPSSLICDCFATDKVCSICLSRRQQVAPRAGTPGFRAPEVL- |
| LSRKLAT.KK.IST.V.NSGV.RKTASSCP..LICD.FATDKVCSI.LSR.QQV.PRA.TP.FR.PEVL. |
Retrocopy | LSRKLATKKKAISTTVVNSGVIRKTASSCPANLICDFFATDKVCSIYLSRQQQVVPRADTPRFRMPEVL> |
|
Parental | TKCPNQTTAIDMWSAGVIFLSLLSGRY-PFYKATDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVP |
| TKCPNQTTAIDMW.A..IFL.LLSG.Y..FYKATDDLTALAQIMTI.GSRETIQA.KTFGKSILCSKEVP |
Retrocopy | TKCPNQTTAIDMWTACIIFLPLLSGQY<SFYKATDDLTALAQIMTIHGSRETIQATKTFGKSILCSKEVP |
|
Parental | AQDLRKLCERLRGIDSKTSKLTSEIQGPASH |
| A..LRKLCE.L..ID.KTSKLTS.IQGP.S. |
Retrocopy | ANALRKLCETLWDIDTKTSKLTSAIQGPTSY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
8 .17 RPM |
SRP012922_cerebellum |
0 .00 RPM |
16 .91 RPM |
SRP012922_heart |
0 .00 RPM |
4 .18 RPM |
SRP012922_kidney |
0 .00 RPM |
0 .82 RPM |
SRP012922_liver |
0 .00 RPM |
1 .39 RPM |
SRP012922_lung |
0 .00 RPM |
9 .62 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
0 .69 RPM |
SRP012922_spleen |
0 .00 RPM |
25 .64 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2242 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.