>retro_dnov_2269
AGAGTGTCCTGACTTGACAAACTGGGGCACCAAACTGCCATGATAGCTGCTATTTTGAAGTCACATTTGGCTAGGACATC
ACTTGACAAAAACAGATTGCAAAGTGTTTCTGAAAAGCTGCACATGGGATGTAAAGTGGAAATGATGACACCTCTGGTGA
CCAGTCCAGGGCATGTGTGCATCACCACACAAACCTATATTTCCAGCCTCTCAACAGTACCTGAAATCTGTGGTGCAGAT
AACTCTCCAGGGTGTCCTTCACATTTACAAACGGCAACACGGCCTTATGCCTTTGGGCTTGGAAGTATTTTGCACAGAAG
ATGATCTGTGTTCCGACATCCACCTGAAGTTCTATGAACATCAAGATAGATATGATCTCTATCTTTATATTGTCCCGAAT
CTAGAGCACCTTGTGGCTGAGCACACTGCCATACTTACATGCTCCAGTGGCAGCAGATCTTCTTGCCAACTACCAGTACC
TCCTGCACATCAACTTGGCTGACTGGAGCTGCAACAACCTCTCCTAGTATCCCATGTTTCCATGGATAATAAATAATAAC
TACAGCTCAGAATTAGATAGGTCAAAATCAGGAAGCTTTTGTGATCTTAGTAAACCAATTGGGGCACTAAACATGGAAAG
GCTGGGAAAATTACTGACAGCTACAGGGAAATGCCAGAGCCAAAATTCAGGTATGGAAGTTACTATTCTTCCCCAGGGCA
TGTGCTATTTTATCTTGTTAGGATTGCATCTGAGTATATGCTATGCCTTCAGAATGGTAGATTTGATAGTGCAGATAGAA
CATTCAACAGTATTGCAGAACCTTGGAAAAACTGTGTAGATGGTGCAACTGATTTTAAAGAGTTGACTCCAGAGTTCTAT
GGTGGTGATGTCGGCTTTTTAGTCAATAGTCTGAAATTGGATTTTGGAAAGAGACCAGGAGGAAAAATGGTGGATGATGT
AGAAGTTTCCCATTGGGCATCAAGTCCTGAGGATTTTCTCCAGAAGAGTAAAGAGGCATTGGAGAGCAATTATGTGTCAG
AGCATCTCCATGAGTGGATCAGTCTCATATTTGGCTACAAGCAAAAAGGAGTGATGCTGTTGGGGTCCCTGATGTATTTC
ACCCCCTGACCTATGAAGGAGGTGTGGACTTGAACAGCATGGAGGGTCCTGATGAGGAAGTAGCTATGCTGACCGAAGTC
TTGGAAATTGGGTAAACACCAAAACAGCTATTCATGACACCACATCCTCAAAGGATCAACCCAAAGTTTAGAAGTGTCTC
AAACCTCCAGTAATAATGTTTCTGGAGCAGATTCCCCAGTCTCCCAGGTGAAGTCTTTTGAAGACCTGACTGAAAACTCA
CCTGGAGTATTATTACCAAACTTCAGT
ORF - retro_dnov_2269 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.84 % |
Parental protein coverage: |
51.74 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
7 |
Retrocopy - Parental Gene Alignment:
Parental | RASCLDKLGDQTAMITAILQSRLARTSFDKNRFQSISEKLHMECKAEMVTPLVTNPGHVCITD-TNLYFQ |
| R.S.LDKLG.QTAMI.AIL.S.LARTS.DKNR.QS.SEKLHM.CK.EM.TPLVT.PGHVCIT..TNLYFQ |
Retrocopy | RVS*LDKLGHQTAMIAAILKSHLARTSLDKNRLQSVSEKLHMGCKVEMMTPLVTSPGHVCITT<TNLYFQ |
|
Parental | PLNG-YPKPVVHITLQDVRRIYKRRHGLMPLGLEVFCTEDDLCSDIYLKFYERQDRDDLYFYIATYLEHH |
| PLN..Y.K.VV.ITLQ.V..IYKR.HGLMPLGLEVFCTEDDLCSDI.LKFYE.QDR.DLY.YI...LEH. |
Retrocopy | PLNS<YLKSVVQITLQGVLHIYKRQHGLMPLGLEVFCTEDDLCSDIHLKFYEHQDRYDLYLYIVPNLEHL |
|
Parental | VAEHTA-ESYMLQWQR-GLLSNYQYLLHLNNLADRSCNDLSQYPVFPWIINDYYSAELDLSNPGTFRDLS |
| VAEHTA...YMLQWQ...LL.NYQYLLH.N.LAD.SCN.LS.YP.FPWIIN..YS.ELD.S..G.F.DLS |
Retrocopy | VAEHTA<HTYMLQWQQ<DLLANYQYLLHIN-LADWSCNNLS*YPMFPWIINNNYSSELDRSKSGSFCDLS |
|
Parental | KPVGALNQERLERLLTR-YREMPEPKFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIA |
| KP.GALN.ERL..LLT..YREMPEPKF.YGS.YSSPG.VLFYLVRIA.EYMLCLQNGRFD.ADR.FNSIA |
Retrocopy | KPIGALNMERLGKLLTA<YREMPEPKFRYGSYYSSPGHVLFYLVRIASEYMLCLQNGRFDSADRTFNSIA |
|
Parental | ETWKNCLDGATDFKELIPEFYGDDISSSVNSLKLDL-KRQGGKMVDDVELPRWASSPGDFLQKSKEALES |
| E.WKNC.DGATDFKEL.PEFYG.D....VNSLKLD..KR.GGKMVDDVE...WASSP.DFLQKSKEALES |
Retrocopy | EPWKNCVDGATDFKELTPEFYGGDVGFLVNSLKLDFGKRPGGKMVDDVEVSHWASSPEDFLQKSKEALES |
|
Parental | SYVSEHLHEWIDLIFGYKQKG-SEAVGAHNVFHPLTYEGGVDLNSIEGPDEKVAMQT-VLEFGQTPKQLF |
| .YVSEHLHEWI.LIFGYKQKG.S.AVG...VFHPLTYEGGVDLNS.EGPDE.VAM.T.VLE.G.TPKQLF |
Retrocopy | NYVSEHLHEWISLIFGYKQKG<SDAVGVPDVFHPLTYEGGVDLNSMEGPDEEVAMLTEVLEIG*TPKQLF |
|
Parental | ITPHPQRITPKFKTVSH-TSSNSAPIADSPGEE--SFEDLTEESKTLAWSNIT |
| .TPHPQRI.PKF..VS...S.N....ADSP.....SFEDLTE.S......N.. |
Retrocopy | MTPHPQRINPKFRSVSN>SSNNVSG-ADSPVSQVKSFEDLTENSPGVLLPNFS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
17 .50 RPM |
SRP012922_cerebellum |
0 .00 RPM |
38 .77 RPM |
SRP012922_heart |
0 .00 RPM |
12 .07 RPM |
SRP012922_kidney |
0 .00 RPM |
12 .32 RPM |
SRP012922_liver |
0 .00 RPM |
7 .90 RPM |
SRP012922_lung |
0 .00 RPM |
21 .99 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
16 .44 RPM |
SRP012922_spleen |
0 .00 RPM |
27 .13 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2269 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
4 retrocopies.