RetrogeneDB ID: | retro_dnov_2442 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_75175:3632..4058(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFDP1 | ||
Ensembl ID: | ENSDNOG00000013266 | ||
Aliases: | None | ||
Description: | craniofacial development protein 1 [Source:HGNC Symbol;Acc:1873] |
Percent Identity: | 70.47 % |
Parental protein coverage: | 50.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LSLDDEEEEDASAESGGSSSEEEDTAAEQEKGFGSEDARKKKEDELWASFLNDVGPKSKVPPSTQVKRGE |
L..D..EEEDA.AESGG.SSEEEDT....E.GFGSEDARKK.ED.LWASFLNDVGPK.KV..STQVKR.E | |
Retrocopy | LASDNKEEEDANAESGGRSSEEEDT----EEGFGSEDARKKEEDKLWASFLNDVGPKLKVSLSTQVKR-E |
Parental | ETEEMSSSKLLVKTEELEKPKEIEKVKITKVFDFAGEEVR-TKEVDATSREAKSFFRNEKERPQTNGPSA |
ETEE.SSS..LV.T.ELEKPKE.E.VK...V.DFAGEEVR.TKEV.A..REAK.FF....E.PQ.N.P.A | |
Retrocopy | ETEEISSSQFLVRTKELEKPKETENVKTIEVVDFAGEEVRVTKEVGAAPREAKFFFQ-QNEKPQVNDP-A |
Parental | LSSAPAGSG |
L.S.P.GSG | |
Retrocopy | LPSLPEGSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 20 .61 RPM |
SRP012922_cerebellum | 0 .00 RPM | 27 .22 RPM |
SRP012922_heart | 0 .00 RPM | 11 .37 RPM |
SRP012922_kidney | 0 .00 RPM | 20 .26 RPM |
SRP012922_liver | 0 .00 RPM | 11 .46 RPM |
SRP012922_lung | 0 .00 RPM | 20 .16 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 12 .46 RPM |
SRP012922_spleen | 0 .11 RPM | 20 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000000695 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013266 | 2 retrocopies |
retro_dnov_2442 , retro_dnov_2546,
|
Echinops telfairi | ENSETEG00000016429 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000890 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019326 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004124 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015362 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001215 | 1 retrocopy |