RetrogeneDB ID: | retro_dnov_2546 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_8459:71117..71747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000025932 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFDP1 | ||
Ensembl ID: | ENSDNOG00000013266 | ||
Aliases: | None | ||
Description: | craniofacial development protein 1 [Source:HGNC Symbol;Acc:1873] |
Percent Identity: | 70.56 % |
Parental protein coverage: | 70.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EEFDSEDFSTSEEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQTQKTKG-KKRKSQSIPSRKRKQGALS- |
EEF.SEDF.TSEE.E.YVPS.GEYS.D.VNELVKEDEVDG.E.TQKTKG......Q.IPSRKRK.G.LS. | |
Retrocopy | EEFSSEDFPTSEEEENYVPSDGEYSADNVNELVKEDEVDGKEWTQKTKGIXXXXFQRIPSRKRKEGGLS< |
Parental | LDDEEEEDASAESGGSSSEEEDTAAEQEKGFGSEDARKK-KEDELWASFLNDVGPKSKVPPSTQVKRGEE |
...EEEEDAS.ESGGSS.EEED.AAEQ.KGFGSED.RKK...DELW.SFLN.V.PKSKVP.STQVKRGEE | |
Retrocopy | IEGEEEEDASVESGGSSREEEDSAAEQDKGFGSEDSRKK<RKDELWTSFLNNVEPKSKVPLSTQVKRGEE |
Parental | TEEMSSSKLLVKTEELEKPKEIEKVKITKVFDFAGEEVR-TKEVDATSRE-AKSFFRNEKERPQTNGPSA |
TEEMSSSKLLV...ELEKP.EIEKVKITKVFD.A..EV..TKEVDA..R.....F..NEK.......PS. | |
Retrocopy | TEEMSSSKLLVRAKELEKPNEIEKVKITKVFDLADNEVMVTKEVDAAFRD<PNPFQENEKLMFLAALPSS |
Parental | LSSA |
L... | |
Retrocopy | LQGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 20 .61 RPM |
SRP012922_cerebellum | 0 .14 RPM | 27 .22 RPM |
SRP012922_heart | 0 .00 RPM | 11 .37 RPM |
SRP012922_kidney | 0 .00 RPM | 20 .26 RPM |
SRP012922_liver | 0 .00 RPM | 11 .46 RPM |
SRP012922_lung | 0 .00 RPM | 20 .16 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 12 .46 RPM |
SRP012922_spleen | 0 .00 RPM | 20 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000000695 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013266 | 2 retrocopies |
retro_dnov_2442, retro_dnov_2546 ,
|
Echinops telfairi | ENSETEG00000016429 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000890 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019326 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004124 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015362 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001215 | 1 retrocopy |