RetrogeneDB ID: | retro_dnov_2649 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_94097:7189..8096(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BZW2 | ||
Ensembl ID: | ENSDNOG00000001663 | ||
Aliases: | None | ||
Description: | basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808] |
Percent Identity: | 77.92 % |
Parental protein coverage: | 72.49 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 4 |
Parental | MNKHQKPVLTG-QRFKTRKRDEKEKFEPTVFRDTLVQ-GLNEAGDDLEAVAKFLDSTGSRLDYRRYADTL |
MNKH.KPVL.G.Q.FKT.KRDEKEKF.PTVFRDTLV..GLNEAGDDLEA.AKF.DSTGSRLDY..Y.DTL | |
Retrocopy | MNKHLKPVLIG>QWFKTQKRDEKEKFKPTVFRDTLVR<GLNEAGDDLEAIAKFMDSTGSRLDYLCYTDTL |
Parental | FDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLL |
F.ILVAGS.LAPG.TR.DDGDKT.M.NHCVFSANEDHETI.NYAQVF.KLIRR.KY.EKA.....KK.LL | |
Retrocopy | FNILVAGSLLAPGRTRSDDGDKTEMSNHCVFSANEDHETI*NYAQVFDKLIRRLKY*EKALRRKWKK-LL |
Parental | FLK-AFSETEQTKLAMLSGILLGNGTLPATILTSLFTDNLVKEGIAASFAVKLFKAW-MAEKDANSVTSS |
F.K.AFSETEQTKLAML.GILL.N.T.PA..L.SL.TDNLVKE.I..SFAVKLFKA...AEKDANSV.SS | |
Retrocopy | FHK<AFSETEQTKLAMLLGILLVNSTIPANNLSSLLTDNLVKEDITTSFAVKLFKAG<VAEKDANSVISS |
Parental | LRKANIDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEMV |
.RKAN.DK.LLEL.PVNRQSVDHF.KYFTD.GLKELSDFL.V.Q.LGTRKELQKE.QE..SQEC.IK.MV | |
Retrocopy | *RKANEDKKLLELSPVNRQSVDHFVKYFTDEGLKELSDFL*V*QVLGTRKELQKEFQEGFSQECLIKKMV |
Parental | LYVKE-EKRNDLPETAVIGLLWTCIMNA |
.YVKE..KRN.LPET.VI..L.TCIMNA | |
Retrocopy | FYVKEGMKRNNLPETTVI*FL*TCIMNA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 61 .45 RPM |
SRP012922_cerebellum | 0 .00 RPM | 11 .41 RPM |
SRP012922_heart | 0 .00 RPM | 224 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 10 .95 RPM |
SRP012922_liver | 0 .00 RPM | 9 .13 RPM |
SRP012922_lung | 0 .00 RPM | 38 .94 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 261 .36 RPM |
SRP012922_spleen | 0 .00 RPM | 41 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001663 | 4 retrocopies | |
Equus caballus | ENSECAG00000022038 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017045 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005256 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017763 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014571 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002506 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009806 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009867 | 1 retrocopy |