RetrogeneDB ID: | retro_dnov_303 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_3448:141065..141714(+) | ||
Located in intron of: | ENSDNOG00000015795 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RSRC2 | ||
Ensembl ID: | ENSDNOG00000008912 | ||
Aliases: | None | ||
Description: | arginine/serine-rich coiled-coil 2 [Source:HGNC Symbol;Acc:30559] |
Percent Identity: | 69.33 % |
Parental protein coverage: | 50.69 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | RERKRRIRSRSRSRSRHRHRSRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDAQEAL |
RE.K..IRS....R.RHR.R.RSR.RTRSRS.D.KKRIE.PRRFSRSLS.TPS..PFRG.NTAMDAQEAL | |
Retrocopy | REGKHWIRSHFH*RARHRDRNRSRNRTRSRSIDKKKRIENPRRFSRSLSQTPSSSPFRGENTAMDAQEAL |
Parental | ARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGS-VLNVAAL-LASGTQVTPQIAMAAQMA-ALQAKA |
..RLERAK.LQE..EK.MVEKQ...EIAAAA...G...LNV..L.LAS..QVTP.IAMAAQMA..L.AK. | |
Retrocopy | VMRLERAKQLQE**EKKMVEKQL--EIAAAATATGG<FLNVSDL<LASRIQVTPHIAMAAQMA<TL*AKV |
Parental | LAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGK-KEGDKSQSAEISYKSNFGNKDQ-NVKFRKLMGI |
LA..GIAVP.YYNP.AVNPMKFA..E.K...L.....K.GDK.QSAE...K.NFGNKDQ.NVKFRKLMGI | |
Retrocopy | LADIGIAVPRYYNPVAVNPMKFAK*ERKENALARHE<KKGDKYQSAEAWEKLNFGNKDQ<NVKFRKLMGI |
Parental | KSEDEAGCSSVDEES |
K.EDE..CSS.DEES | |
Retrocopy | KGEDEDACSSFDEES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 80 .51 RPM |
SRP012922_cerebellum | 0 .27 RPM | 91 .55 RPM |
SRP012922_heart | 0 .00 RPM | 39 .91 RPM |
SRP012922_kidney | 0 .00 RPM | 62 .43 RPM |
SRP012922_liver | 0 .00 RPM | 29 .10 RPM |
SRP012922_lung | 0 .15 RPM | 101 .41 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 36 .52 RPM |
SRP012922_spleen | 0 .00 RPM | 78 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020419 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008912 | 1 retrocopy |
retro_dnov_303 ,
|
Macaca mulatta | ENSMMUG00000004412 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029422 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001238 | 1 retrocopy |