>retro_dnov_440
TTGGAGACTTCCTTCACCCAAAAGATATCTAGTCCATTTTTATTACGAAATGAAAATGGTATTGATGGGGAGCCAGCTGA
AGAGGCAGTTTCTCAAAAACCTCGAAAGAAGAAAAAGAAAACTCAGCCAGCAGAATTACAGTATGCAAATGAGCTAGGAG
TAGAAGATGAAGACATAATTACTGATGAGCAAAGTGGTCCAGAGCAACAGTCTGTATTCACTGCACCCACTGGCGTTAGC
CAGCCTGTAGGCAAAGTATTTGTGGAAAAAAGCCGCCGATTCCAGGCCGCTGATCGTTCAGAGTTGATAAAGACCACAGA
AAATGTAGATGTGTCCATGGACCTGAAGCCTTCCTGGACGACCAGAGATGTTGCACTTTCAGTACACCGGGCTTTCAGGA
TGATTGGTCTCTTTTCTCATGGCTTCTTGGCTGGCTGCGCTGTGTGGAATATTGTTGTGATATATGTTCTAGCAGGAGAT
CAACTATCTAATCTCTCAAACCTTCTGCAGCAATATAAGACTTTAGCATATCCATTCCAGAGTCTTCTCTACATGCTTTT
GGCTCTAAGTACAATTTCAGCTTTTGACAGGATTGACTTGGCTAAAACATCAGTAGCCATCCGAAGTTTTCTTGCCCTGG
ATCCAACAGCTTTAGCATCTTTTTTGTACTTTGCTGCTCTTATACTATCCTTGAGTCAACAAGTGACAAGTGACAGAATC
CACCTTTACACACCTCCTTCTGTTAATGGTAGCCTCTGGGCAACAGGAAATGAGGAACAGATTCTCCAACCATGGATTGT
GGTGAATCTAGTGGTGGCCCTGCTGGTTGGATTATCTTGGGTTTTTTTGTCTTATAGACCAGGCGTGGATCTTAGTGAA
ORF - retro_dnov_440 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
99.66 % |
Parental protein coverage: |
75.32 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LETSFTQKISSPFLLRNENGIDGEPAEEAVSQKPRKKKKKTQPAELQYANELGVEDEDIITNEQSGPEQQ |
| LETSFTQKISSPFLLRNENGIDGEPAEEAVSQKPRKKKKKTQPAELQYANELGVEDEDIIT.EQSGPEQQ |
Retrocopy | LETSFTQKISSPFLLRNENGIDGEPAEEAVSQKPRKKKKKTQPAELQYANELGVEDEDIITDEQSGPEQQ |
|
Parental | SVFTAPTGVSQPVGKVFVEKSRRFQAADRSELIKTTENVDVSMDLKPSWTTRDVALSVHRAFRMIGLFSH |
| SVFTAPTGVSQPVGKVFVEKSRRFQAADRSELIKTTENVDVSMDLKPSWTTRDVALSVHRAFRMIGLFSH |
Retrocopy | SVFTAPTGVSQPVGKVFVEKSRRFQAADRSELIKTTENVDVSMDLKPSWTTRDVALSVHRAFRMIGLFSH |
|
Parental | GFLAGCAVWNIVVIYVLAGDQLSNLSNLLQQYKTLAYPFQSLLYMLLALSTISAFDRIDLAKTSVAIRSF |
| GFLAGCAVWNIVVIYVLAGDQLSNLSNLLQQYKTLAYPFQSLLYMLLALSTISAFDRIDLAKTSVAIRSF |
Retrocopy | GFLAGCAVWNIVVIYVLAGDQLSNLSNLLQQYKTLAYPFQSLLYMLLALSTISAFDRIDLAKTSVAIRSF |
|
Parental | LALDPTALASFLYFAALILSLSQQVTSDRIHLYTPPSVNGSLWATGNEEQILQPWIVVNLVVALLVGLSW |
| LALDPTALASFLYFAALILSLSQQVTSDRIHLYTPPSVNGSLWATGNEEQILQPWIVVNLVVALLVGLSW |
Retrocopy | LALDPTALASFLYFAALILSLSQQVTSDRIHLYTPPSVNGSLWATGNEEQILQPWIVVNLVVALLVGLSW |
|
Parental | VFLSYRPGVDLSE |
| VFLSYRPGVDLSE |
Retrocopy | VFLSYRPGVDLSE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .58 RPM |
0 .39 RPM |
SRP012922_cerebellum |
4 .67 RPM |
4 .26 RPM |
SRP012922_heart |
2 .32 RPM |
1 .86 RPM |
SRP012922_kidney |
2 .74 RPM |
2 .74 RPM |
SRP012922_liver |
0 .93 RPM |
0 .15 RPM |
SRP012922_lung |
5 .80 RPM |
3 .05 RPM |
SRP012922_quadricep_muscle |
1 .56 RPM |
0 .35 RPM |
SRP012922_spleen |
2 .98 RPM |
2 .98 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_440 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.