RetrogeneDB ID: | retro_dnov_530 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_5795:221476..221977(+) | ||
Located in intron of: | ENSDNOG00000006120 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BCCIP | ||
Ensembl ID: | ENSDNOG00000002939 | ||
Aliases: | None | ||
Description: | BRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:978] |
Percent Identity: | 78.36 % |
Parental protein coverage: | 66.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | EVNIEFEAYSISDNDYDGIKKLLHQLFLKAPVNTAELTNLLVQQNHIGSVIKQTDVSEDSDDDVEVDEDE |
EVNI.F.AY.ISDN.YDGIKKLLHQLFLKAPVNTAELT.L..QQ.H.GSV..QTDVSE.SDD.V.VDEDE | |
Retrocopy | EVNI*FGAYTISDNNYDGIKKLLHQLFLKAPVNTAELTDLVIQQSHTGSVTTQTDVSEGSDDEVDVDEDE |
Parental | IFGFISLLNLTERKGTQCAEQIKELILSFCEKNCEKSMVEQLDKLLNDTTKPVGLLLSERFINVPPQIAL |
.FGF.SLLNLT..KGTQCAEQIK.LILSF.E.NCEKSMVEQL.K..ND.TKPVGLLLSER.INV...I.L | |
Retrocopy | SFGFLSLLNLTQ*KGTQCAEQIKVLILSFWE-NCEKSMVEQLGKFFNDSTKPVGLLLSERIINV---ISL |
Parental | PMHQQLQKELAEAHKMNKPCGKCCFYLMISK |
.MHQQLQKEL.EAHK.NKP.GKCC.YL..SK | |
Retrocopy | SMHQQLQKELTEAHKTNKPHGKCCCYLLNSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .39 RPM | 35 .78 RPM |
SRP012922_cerebellum | 1 .10 RPM | 23 .37 RPM |
SRP012922_heart | 0 .00 RPM | 21 .11 RPM |
SRP012922_kidney | 1 .37 RPM | 23 .27 RPM |
SRP012922_liver | 0 .00 RPM | 17 .18 RPM |
SRP012922_lung | 0 .31 RPM | 24 .74 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 24 .58 RPM |
SRP012922_spleen | 0 .00 RPM | 34 .91 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012873 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012411 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002939 | 1 retrocopy |
retro_dnov_530 ,
|
Macaca mulatta | ENSMMUG00000008541 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008761 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010901 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011828 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000002570 | 4 retrocopies |