RetrogeneDB ID: | retro_dnov_545 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_598:89491..89889(+) | ||
Located in intron of: | ENSDNOG00000007641 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STMN2 | ||
Ensembl ID: | ENSDNOG00000003373 | ||
Aliases: | None | ||
Description: | stathmin-like 2 [Source:HGNC Symbol;Acc:10577] |
Percent Identity: | 71.11 % |
Parental protein coverage: | 74.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DMEVKQINKRASGQAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAE |
D..VK...KRASGQAFELIL.P.S..S..P....SP.KKDLSLEEI.KKLEAAEERRKS.EA.VLKQLAE | |
Retrocopy | DIQVKELEKRASGQAFELILSPRSKES-VPEFPFSPPKKDLSLEEI*KKLEAAEERRKSHEAEVLKQLAE |
Parental | KREHEREVLQKAL-EENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKE |
KREHE.EVLQKA...ENNNFSKMAEEKL..KME..KEN.EA..AA..ERL.EK..H..EV..NKE | |
Retrocopy | KREHEKEVLQKAI<KENNNFSKMAEEKLTHKMEANKENQEAQMAAKLERLREKDKHIEEVQKNKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 13 .03 RPM | 26 .06 RPM |
SRP012922_cerebellum | 21 .86 RPM | 399 .90 RPM |
SRP012922_heart | 2 .09 RPM | 0 .93 RPM |
SRP012922_kidney | 6 .57 RPM | 1 .10 RPM |
SRP012922_liver | 1 .55 RPM | 28 .17 RPM |
SRP012922_lung | 9 .16 RPM | 15 .73 RPM |
SRP012922_quadricep_muscle | 0 .35 RPM | 0 .52 RPM |
SRP012922_spleen | 9 .16 RPM | 88 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003373 | 3 retrocopies |
retro_dnov_2381, retro_dnov_545 , retro_dnov_831,
|
Dasypus novemcinctus | ENSDNOG00000003756 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001863 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027869 | 2 retrocopies | |
Oryzias latipes | ENSORLG00000008251 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010989 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025094 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000014759 | 1 retrocopy |