RetrogeneDB ID: | retro_dnov_624 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_6933:4275..4842(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAK16 | ||
Ensembl ID: | ENSDNOG00000008424 | ||
Aliases: | None | ||
Description: | MAK16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:13703] |
Percent Identity: | 75.92 % |
Parental protein coverage: | 65.07 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | KQFCSFKLSSKTQRFYRNEYSLTELCNQSSCPLPNRQCTTMKEEKGQCYLFMKVIERAAFPRRLWERVRL |
K..CSFK...KTQ.F.RNEYSLT.LC..SSCP..N.Q..T.KEEKGQC...MKVIE..AFPR.L.E.V.L | |
Retrocopy | KNICSFKMRTKTQGFFRNEYSLTGLCSRSSCPMENCQYATIKEEKGQC*-YMKVIE*VAFPRHL*EQVWL |
Parental | SKNYEKALEQIDENLIYWPQFIRH-KCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKKVERREKRREEKA |
SKNYEKAL.QIDENLIYW..FIRH.K.KQRFTKITQYLIR.R.L.LK.QRKLVPLSKKVE.REKR.EEKA | |
Retrocopy | SKNYEKALGQIDENLIYWLHFIRHNKYKQRFTKITQYLIRVRNLILK*QRKLVPLSKKVEQREKR-EEKA |
Parental | LVAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALEQQEAESDSSDAE |
.VAAQ.DNAIEKELLERLKQD..G..YNF..HAFDKALEQQ..ESDSSDAE | |
Retrocopy | FVAAQPDNAIEKELLERLKQDI*GNMYNFLVHAFDKALEQQGVESDSSDAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 24 .89 RPM |
SRP012922_cerebellum | 0 .00 RPM | 22 .96 RPM |
SRP012922_heart | 0 .00 RPM | 8 .59 RPM |
SRP012922_kidney | 0 .00 RPM | 15 .61 RPM |
SRP012922_liver | 0 .00 RPM | 12 .85 RPM |
SRP012922_lung | 0 .00 RPM | 27 .03 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 9 .17 RPM |
SRP012922_spleen | 0 .00 RPM | 34 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009081 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008424 | 1 retrocopy |
retro_dnov_624 ,
|
Latimeria chalumnae | ENSLACG00000018758 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006945 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002758 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008735 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000015832 | 1 retrocopy |