RetrogeneDB ID: | retro_dnov_803 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_109032:352..682(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM230 | ||
Ensembl ID: | ENSDNOG00000005724 | ||
Aliases: | None | ||
Description: | transmembrane protein 230 [Source:HGNC Symbol;Acc:15876] |
Percent Identity: | 51.75 % |
Parental protein coverage: | 80.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LATGIPSSKVKYSRLSSTDDGYID-LQFKKSPPKIPYKAIALATVLFLI-GAFLIIIGSLLLAGYISKGG |
L...I.S..VKYSRL..TD.G..D.L.F.KS.P..P.KAIA...VLFL..G.FL....SL.L.GY.S..G | |
Retrocopy | LTPEISSRRVKYSRLPRTDGGSMD<LPFEKSAPESPSKAIAFIAVLFLT<GSFLVVTDSLPLGGYVSNRG |
Parental | ADRAVPVLIIGILVFLPGFYHLRIAYYASQGY-RGYSYDDIPDF |
..R..P.L..GI..FL..FYH.R..Y.AS.G...GYS.DDI..F | |
Retrocopy | QARPCPLLTTGIPTFLLDFYHVRTVYSASTGV<PGYSSDDILHF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 20 .03 RPM |
SRP012922_cerebellum | 0 .00 RPM | 12 .23 RPM |
SRP012922_heart | 0 .00 RPM | 3 .94 RPM |
SRP012922_kidney | 0 .00 RPM | 19 .44 RPM |
SRP012922_liver | 0 .00 RPM | 9 .91 RPM |
SRP012922_lung | 0 .00 RPM | 22 .60 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 5 .19 RPM |
SRP012922_spleen | 0 .00 RPM | 22 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009083 | 1 retrocopy | |
Bos taurus | ENSBTAG00000006063 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006039 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005724 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000023089 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000008611 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002863 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019378 | 1 retrocopy |