>retro_dnov_845
GTTGAAGAGATGGAAGCCTGGCGACTCTTTCAGCAGATTCTTTCTGCTGTGGATTACTGTCATAGGCATATGGTTGTTCA
TCGAGATCTGAAACCAGAGAATGTCCTATTGGATGCACACATGAATGCCAAGATAGCTGATTTTGGATTATCTAATATGA
TGTCAGATGGTGAATTTCTGCGAACTAGTTGTGGATCTCCAAATTATGCAGCACCTGAAGTCATCTCAGGCAGGTTGTAT
GCAGGTCCTGAAGTTGACATCTGGAGCTGTGGTGTTATTTTATATGCTCTTCTTTGTGGCACGCTCCCTTTTGATGATGA
GCATGTACCTACGTTATTTAAGAAGATCTGAGGAGGTGTTTTTTATATACCAGAATATCTTAATCGTTCTATTGCCACTC
TTCTGATGCATATGCTGCAGGTTGACCCCCTGAAACGAGCAACTATCAAAGACATAAGAGAACATGAATGGTTTAAACAA
GATTTGCCCAGTTACTTATTTCCTGAAGACCCTTCCTATGATGCTAACGTCATTGACAATGAGGCTGTGAAAGAAGTGTG
CGAAAAATTTGAGTGTACAGAATCAGAAGTAATGAACAGTTTATATAGTGGTGACCCTCAAGACCAGCTTGCAGTGGCTT
ATCATCTTATCATTGATAATCGGAGAATAATGAACCAAGCCAGTGAATTCTACCTCGCCTCTAGTCCCCCAACTGGATCT
TTTATGGATGATAGTGCCATGCATATTCCCCCAGGCCTGAAACCTCATCCAGAAAGGATGCCTCCTCTTATAGCAGACAG
CCCCAAAGCAAGATGTCCATTGGATGCACTG
ORF - retro_dnov_845 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.92 % |
Parental protein coverage: |
50.18 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYA |
| VEEMEA.RLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYA |
Retrocopy | VEEMEAWRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYA |
|
Parental | APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSIATLLMHMLQ |
| APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKI.GGVFYIPEYLNRSIATLLMHMLQ |
Retrocopy | APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKI*GGVFYIPEYLNRSIATLLMHMLQ |
|
Parental | VDPLKRATIKDIREHEWFKQDLPSYLFPEDPSYDANVIDDEAVKEVCEKFECTESEVMNSLYSGDPQDQL |
| VDPLKRATIKDIREHEWFKQDLPSYLFPEDPSYDANVID.EAVKEVCEKFECTESEVMNSLYSGDPQDQL |
Retrocopy | VDPLKRATIKDIREHEWFKQDLPSYLFPEDPSYDANVIDNEAVKEVCEKFECTESEVMNSLYSGDPQDQL |
|
Parental | AVAYHLIIDNRRIMNQASEFYLASSPPTGSFMDDSAMHIPPGLKPHPERMPPLIADSPKARCPLDAL |
| AVAYHLIIDNRRIMNQASEFYLASSPPTGSFMDDSAMHIPPGLKPHPERMPPLIADSPKARCPLDAL |
Retrocopy | AVAYHLIIDNRRIMNQASEFYLASSPPTGSFMDDSAMHIPPGLKPHPERMPPLIADSPKARCPLDAL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
8 .56 RPM |
SRP012922_cerebellum |
0 .00 RPM |
1 .79 RPM |
SRP012922_heart |
0 .00 RPM |
1 .86 RPM |
SRP012922_kidney |
0 .00 RPM |
1 .92 RPM |
SRP012922_liver |
0 .00 RPM |
2 .63 RPM |
SRP012922_lung |
0 .00 RPM |
0 .31 RPM |
SRP012922_quadricep_muscle |
0 .17 RPM |
7 .44 RPM |
SRP012922_spleen |
0 .00 RPM |
0 .23 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_845 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
9 retrocopies.