>retro_dnov_885
ATGAACAGTCAGCTCAACGGCTTCCACGAGGCGTTCATTGAGGAGGGCACATTCCTCTTCACCTCAGAGTCTGTGGGGGA
AGGCCACCCAGATAAGATTTGTGACCAGATCAGTGATGCTGTGCTTGATGCCCACCTTCAGCAGGACCCTGATGCCAAAG
TAGCTTGTGAAACTGTTGCTAAAACTGGAATGATCCTTCTTGCTGGGGAAATTACATCCAGAGCTGCTGTTGACTACCAG
AAAGTGGTTCGTGAAACCATTAAACACATTGGCTATGATGATTCTTCCAAAGGGTTTGACTACAAGACCTGTAATGTGCT
GGTGGCCTTGGAACAACAATCACCAGATATTGCTCAAGGCATTCATCTTGATCGGAATGAGGAAGACATTGGTGCAGGAG
ACCAGGGTTTGATGTTTGGTTAAGCCACTGATGAAACTGAAGAGTGTATGCCTTTAACCATTGTCTTAGCACACAAGCTC
AATGCCAAACTGGCTGAACTACGCCGCAATGGCACTTTGCCTTGGCTACGCCCAGATTCTAAAACTCAAGTGACAGTGCA
GTACATGCAGGATTGAGGTGCTGTGCTTCCCATCAGAGTCCACACAATTCTGATATCGGTTCAGCATGATGAAGATGTTT
GTCTTGATGAGATGAGGGATGCCCTAAAGGAGAAAGTCATCAAAGCTGTTGTACCTGCAAAATGCCTTGATGAGGATACA
ATCTACCACCTTCAGCCAAGTGGCAGATTTGTTATTGGTGGGCCTCAGAGTGATGCTGGTTTGACTGGCCGGAAGATCAT
TGTGGACACTTATGGTGGTTGGGGAACTCACGGAGGAGGTGCCTTTTCAGGAAAGGATTATACCAAGGTGGACCGTTCTG
CTGCTTATGCTGCTCGTTGGGTGGCAAAATCCCTTGTTAAAGGAGGTTTATGCAGAAGGGTTCTTGTTCAGGTCTCTTAT
GCTATTGGAGTTTCTCATCCATTGTCTATCTCCATTTTCCATTATGGCACCTCTCAGAAGAGTGAGAGAGAGCTATTAGA
GATCGTGAAGAAGAATTTTGACCTCCGCCCTGGGGTCATTGTCAGGGATCTGGATCTGAAGAAGCCAATTTATCAGAGGA
CTGCAGCCTATGGCCACTTTGGTAGGGACAGCTTCCCATGGGAAGTGCCCAAAAAGCTTAAATAT
ORF - retro_dnov_885 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.58 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MNGPVDGLCDHSLSEEGAFMFTSESVGEGHPDKICDQISDAVLDAHLRQDPNAKVACETVCKTGMVLLCG |
| MN....G.......EEG.F.FTSESVGEGHPDKICDQISDAVLDAHL.QDP.AKVACETV.KTGM.LL.G |
Retrocopy | MNSQLNGFHE-AFIEEGTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAG |
|
Parental | EITSGAMVDYQRVVRDTIQHIGYDDSAKGFDFKTCNVLVALEQQSSDIAQCVHLDRNEEDFGAGDQGLMF |
| EITS.A.VDYQ.VVR.TI.HIGYDDS.KGFD.KTCNVLVALEQQS.DIAQ..HLDRNEED.GAGDQGLMF |
Retrocopy | EITSRAAVDYQKVVRETIKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGIHLDRNEEDIGAGDQGLMF |
|
Parental | GYATDETEECMPLTIILAHKLNARMADLRRSGVLPWLRPDSKTQVTVQYMQDNGAVIPLRIHTIVISVQH |
| G.ATDETEECMPLTI.LAHKLNA..A.LRR.G.LPWLRPDSKTQVTVQYMQD.GAV.P.R.HTI.ISVQH |
Retrocopy | G*ATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQD*GAVLPIRVHTILISVQH |
|
Parental | DEDIDLEGMRTALKEQVIRAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGG |
| DED..L..MR.ALKE.VI.AVVPAK.LDEDTIYHLQPSGRFVIGGPQ.DAG.TGRKIIVDTYGGWG.HGG |
Retrocopy | DEDVCLDEMRDALKEKVIKAVVPAKCLDEDTIYHLQPSGRFVIGGPQSDAGLTGRKIIVDTYGGWGTHGG |
|
Parental | GAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSRKTERELLDIV |
| GAFSGKDYTKVDRSAAYAARWVAKSLVK.GLCRRVLVQVSYAIGV..PLSISIF.YGTS.K.ERELL.IV |
Retrocopy | GAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIV |
|
Parental | NKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFQ-EVPKRLVF |
| .KNFDLRPGVIVRDLDLKKPIYQ.TA.YGHFGR..F..EVPK.L.. |
Retrocopy | KKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKKLKY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
45 .51 RPM |
0 .58 RPM |
SRP012922_cerebellum |
44 .13 RPM |
0 .41 RPM |
SRP012922_heart |
12 .99 RPM |
0 .23 RPM |
SRP012922_kidney |
39 .70 RPM |
14 .78 RPM |
SRP012922_liver |
8 .36 RPM |
1175 .60 RPM |
SRP012922_lung |
49 .94 RPM |
0 .92 RPM |
SRP012922_quadricep_muscle |
15 .75 RPM |
0 .35 RPM |
SRP012922_spleen |
54 .14 RPM |
0 .11 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_885 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.