RetrogeneDB ID: | retro_dord_607 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_39764:4619..5001(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDORG00000009236 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.12 % |
Parental protein coverage: | 79.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GERTIE-LHSMGAWWTWPENFDAPL-VFYLTEEQEKVIFGQGDAFLPCIEKHSHTLIQLEPWFTATSHTQ |
GE..IE..HSMGAWWTW.ENFDAPL.VFYLT.E.EKVIFGQG.AFLP.IEKH.HTL.QLEPWFTAT.HTQ | |
Retrocopy | GEDNIE*THSMGAWWTWSENFDAPL>VFYLTKEEEKVIFGQGGAFLPYIEKHGHTLMQLEPWFTATGHTQ |
Parental | VTVVGPPKAKQWLRNMVQYLGHQDARCQAQGYQMLQSVRSQPLTNKDLAASLSALLKA |
VTVVGPPKA.Q.LRNM.QYLG.QD.RCQAQG..MLQ.VRSQPLT..DLA.S..A.L.A | |
Retrocopy | VTVVGPPKARQ*LRNMAQYLGQQDTRCQAQGLEMLQHVRSQPLTKEDLAFSFIASLTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000009236 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000006451 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018573 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067750 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000028154 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006102 | 1 retrocopy |