RetrogeneDB ID: | retro_ecab_1018 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 9:76393364..76393965(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000020332 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.68 % |
Parental protein coverage: | 96.1 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | QSKTLEMKNTMDEVKKNLGSVNNRADIIEETISSLEDRNIEILQIEEERELRLKRNEEILQEVSKSIRKG |
QS..LE..NTM.E.KKNL.S..NRADI.E..I..L....IEILQ...ERELRLKRNEEILQE.S..IRK. | |
Retrocopy | QSEVLERMNTMNEIKKNLQSLKNRADIMEDGIRNLDEGLIEILQMTKERELRLKRNEEILQEESD*IRKC |
Parental | NIRLIGIPEGEEKDKGAESLFKEIIAGNFPNLGKELEIQVKEAKRIPNYITVKRHS-PRHIVEKLAKVND |
NIR.IGIPEGEE..K.AESLFKEIIA.NFPNL...LE..V.E..R.PNYI.VKR.S.PRHI..KLAKVND | |
Retrocopy | NIRIIGIPEGEEREKTAESLFKEIIAENFPNLENKLELHVNETIRTPNYIKVKRPS>PRHILVKLAKVND |
Parental | KEKVLRAANK---KQQIITYKGAPIRLSADFSTETLQARREWSDIFKALKDKNLQPRILYP |
KEK.LR........Q..ITYKG..IRLSADF..E..QAR.E..D.FK.LK..N.QPR..YP | |
Retrocopy | KEKLLRVTRQNIGQQKKITYKGPSIRLSADF*AES*QARKELNDTFKILKHNNFQPRLFYP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .00 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies |
retro_ecab_1018 , retro_ecab_117, retro_ecab_125, retro_ecab_346, retro_ecab_54, retro_ecab_604, retro_ecab_774, retro_ecab_775, retro_ecab_878,
|
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |