RetrogeneDB ID: | retro_ecab_1021 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 9:24469041..24469918(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010030 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.86 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 1 |
Parental | RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKN |
.....FQ....DK..EKEL.ETEI..LPDK..K..V...LTDLGRR..EHSEN.NKEL.NIKK.QSE.KN | |
Retrocopy | KEKNMFQIRQ*DKSSEKELKETEINYLPDKKYKLTVIRMLTDLGRRKEEHSENVNKELGNIKKNQSELKN |
Parental | TIMEMKNSLEGLNSRVDDTEERISKLDERLEEVTQAEQIKEKMKKTDSLRDLWDNIKCTKIRITGVPE-E |
TI.E.K.SLEG.NS.VD.TE..IS.L...L................DSLRDLWD.IK.T.I.I.GVPE.E | |
Retrocopy | TISEKKTSLEGINSTVDHTEK*ISILEKSLRKSS*XXXXXXXXXXEDSLRDLWDYIKHTNIYIIGVPEGE |
Parental | EGDKGA-EIYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNKERILKAARER |
..DKGA...YL.K...N...L.KE.D.Q..EAQ.APN..N.KR.T.RHII...S.....K..ILKAARE. | |
Retrocopy | D*DKGA>KTYLKK**LNAIQLGKETDIQEKEAQRAPNKMNSKRPTLRHIII*MSKI-KEKNKILKAAREK |
Parental | QQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKKP-PRILYLARSSFIMEGEIKCFPDKQKLKEFI |
QQVTYKGN.IRLSA..SAETLQARRK.H.I.KVL..KKP..RIL.LAR.SF...GE.K.F..KQKLKEF. | |
Retrocopy | QQVTYKGNLIRLSAGYSAETLQARRKRHNILKVLKAKKPVTRILHLARLSFRIGGERKSFLNKQKLKEFT |
Parental | TKKPALQEMLKGLI |
T.K.ALQ.MLKGLI | |
Retrocopy | TIKIALQ*MLKGLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021 , retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |