RetrogeneDB ID: | retro_ecab_1073 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:55857391..55858232(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000023806 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKKSQSEM |
MRRQRNMF....QDK..EKELN.T...NLPDKE.K...IRML..LG...D.HSEN..........SQSE. | |
Retrocopy | MRRQRNMFKIKEQDKSSEKELNKTGINNLPDKEYKLMVIRMLTELG-KIDEHSENFYXXXXXXXXSQSEL |
Parental | KSTILKMKNSLEGLNSRVDDTEEWIKKLDEKLEEISQ-VNQVKEKTILKNDSKIKELWDNIKHANIRIIS |
K.TI.KMKNS..G.NSRVDD.EE.I..LD...EEI.Q.VN.........N......LWDNI.H..I.I.. | |
Retrocopy | KNTIIKMKNSVGGINSRVDDIEE*INDLDDRVEEITQ>VNXXXXXXXXENEDSLRDLWDNIMHTKIHIVG |
Parental | VPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMSKIKDKERILKA |
V..G.ER.KG.EN.FEEI..ENFPNLRKETDI..QE.QR.PNK..PKRP.P..IIIKMS.IK.K.R.LKA | |
Retrocopy | VLEGGERDKGAENIFEEITAENFPNLRKETDIYIQEAQRPPNKMNPKRPMPRYIIIKMSRIKYKKRLLKA |
Parental | ARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVLKGKNLQPRIFYPSRSSFRMEGEIKRFPDKQNV |
.RER..VTYKG..I..SADFSAETLQA.R.WH.IFK...GK.LQPRI.YP.R.SFRMEGEIK.F.DKQ.. | |
Retrocopy | VRERQQVTYKGNSIKISADFSAETLQARRKWHNIFKMWEGKKLQPRILYPARLSFRMEGEIKSFLDKQKL |
Parental | KE |
.E | |
Retrocopy | QE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .12 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .28 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .08 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |