>retro_ecab_1104
ATGTCGAAGAACACGGTGTCGTCAGCCCGGTTCCGGAAGGTGGATGTGGATGAGTATGACGAGAACAAGTTCGTGGACGA
GGAAGACGGGGGCGACGGGCAGGCCGGGCCGACGAGGGCGAGGTGGACTCCTGCCTGCGGCAAGGAAACACGATGGCTGC
CCTACAGGCAGCTCTGAAAAACCCCCCATCAACACCAAGAGTCAGGCGGTGAAGGATCGAGCAGGCAGCATTGTCTTGAA
GGTACTCATCTCTTTTAAAGCTAATGATATTGAAAAGGCAGTTCAATCCCTGGACAAGAATGGTGTGGATCACCTCATGA
AGTATATTTATAAAGGCTTTGAGAGCCCCTCTGACAATAGCAGTGCTGTGTTATTGCAGTGGCATAAAAAGGCACTTGCT
GCCGGAGGAGTAGGGTCCGTTGTTCGAGTCTTGACTGCGAGGAAAACC
ORF - retro_ecab_1104 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.79 % |
Parental protein coverage: |
99.34 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGP-DEGEVDSRLRQYPCPRDPRAALKN-PPINTKS |
| MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGP.DEGEVDS.LRQ........AALKN.PPINTKS |
Retrocopy | MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGP<DEGEVDSCLRQGNTMAALQAALKN<PPINTKS |
|
Parental | QAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGV |
| QAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVD.LMKYIYKGFESPSDNSSAVLLQWH.KALAAGGV |
Retrocopy | QAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDHLMKYIYKGFESPSDNSSAVLLQWHKKALAAGGV |
|
Parental | GSIVRVLTARKT |
| GS.VRVLTARKT |
Retrocopy | GSVVRVLTARKT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .71 RPM |
9 .27 RPM |
SRP021940_cerebellum |
1 .51 RPM |
17 .14 RPM |
SRP021940_embryo |
1 .69 RPM |
18 .77 RPM |
SRP021940_placental_villous |
5 .05 RPM |
60 .09 RPM |
SRP021940_synovial_membrane |
4 .01 RPM |
47 .79 RPM |
SRP021940_testis |
0 .64 RPM |
8 .12 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_1104 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_1104 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_1104 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.