RetrogeneDB ID: | retro_ecab_1108 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:44387069..44387902(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000023806 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLID-LGRRMDKHSENVNKELENIKKSQSE |
M.R.RN.F..R.QDK.PEKELNET..D.LPDKEFKQ..IRMLID.LG......SEN.NKELE.IKK.QSE | |
Retrocopy | MMR*RNIFQVRKQDKSPEKELNETEIDYLPDKEFKQRVIRMLID>LGEEL---SENINKELEKIKKNQSE |
Parental | MKSTILKMKNSLEGLNSRVDDTEEWIKKLDEKLEEISQ-VNQVKEKTILKNDSKIKELWDNIKHANIRII |
MK.TI..MK.SLEGLNSRVD.TEEWI.KLDE.LEEI.Q..N................LWDNI.H.NI..I | |
Retrocopy | MKNTIPEMKLSLEGLNSRVD-TEEWISKLDERLEEITQ>LNRXXXXXXXXSEGSLRDLWDNI*HTNICVI |
Parental | SVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMSKIKDK-ERIL |
.VPGGEER.KG.ENLFEEII..NFPNLRKETDIQVQE.Q.APNK..P.RPTP.HIII..S.IKD..ERI. | |
Retrocopy | GVPGGEERDKGAENLFEEIIADNFPNLRKETDIQVQEAQTAPNKRTPRRPTPRHIIIERSRIKDE<ERIP |
Parental | KAARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVL-KGKNLQPRIFYPSRSSFRMEGEIKRFPDK |
K..RE...VT..G.PI.LSADFSAETLQA.REWH..FKVL.KGKNLQPRI.YP...S.RM.GEIK.F.DK | |
Retrocopy | KTTREGQQVTFRGNPIMLSADFSAETLQARREWHNVFKVL>KGKNLQPRILYPASLSLRMIGEIKSFSDK |
Parental | QNVKE |
Q..KE | |
Retrocopy | QKLKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .12 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .28 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .08 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |