RetrogeneDB ID: | retro_ecab_1121 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:74959267..74960528(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BZW2 | ||
Ensembl ID: | ENSECAG00000022038 | ||
Aliases: | None | ||
Description: | basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808] |
Percent Identity: | 90.8 % |
Parental protein coverage: | 99.53 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RNFMNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYRRYADT |
RNFM.KHQ.PVLTGQRFKT.KRDEKEKF.PTVFRDTLVQ.LNE..DDLEAVAKFLDSTGSRLDY.R.ADT | |
Retrocopy | RNFMTKHQEPVLTGQRFKTQKRDEKEKFKPTVFRDTLVQRLNEDRDDLEAVAKFLDSTGSRLDYCRCADT |
Parental | LFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLL |
LFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHE.I.NYAQVFNKLIRRYKYLEKAFEDEMKKLL | |
Retrocopy | LFDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHEII*NYAQVFNKLIRRYKYLEKAFEDEMKKLL |
Parental | LFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSL |
.FLKAFS.TEQTKLAMLSGILL.NGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWM.EKDANS..SSL | |
Retrocopy | FFLKAFSKTEQTKLAMLSGILLDNGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWMTEKDANSLLSSL |
Parental | RKANLDKRLLELFPVNRQSVDHFAKY-FTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVV |
RKANLDKRLLELFPVNRQSVDHFAKY...DAGLKELS.FL.VQ.SLGTRKELQKELQE.LSQECPI.EVV | |
Retrocopy | RKANLDKRLLELFPVNRQSVDHFAKY<LADAGLKELSYFL*VQRSLGTRKELQKELQECLSQECPIEEVV |
Parental | LYVKEEMKRNDLPETAVIGLLWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELILLQKV |
LYVKEEMKRNDLP.TAVIGLLWTCIMNAVEWNKKE.L.AEQALKHL.QYAPLLAVFSSQGQSELILLQKV | |
Retrocopy | LYVKEEMKRNDLPKTAVIGLLWTCIMNAVEWNKKEDLIAEQALKHLRQYAPLLAVFSSQGQSELILLQKV |
Parental | QEYCYDNIHFMKAFQ-KIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESE |
QEYCYDNIHFMKAFQ...V....KA.VLSEEAILK.YKEAHVAKGKSVFLDQMKKFV.WLQNAEEESESE | |
Retrocopy | QEYCYDNIHFMKAFQ<DLVLFY-KAGVLSEEAILK*YKEAHVAKGKSVFLDQMKKFVKWLQNAEEESESE |
Parental | GEES |
GEES | |
Retrocopy | GEES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 26 .86 RPM |
SRP021940_cerebellum | 0 .05 RPM | 23 .01 RPM |
SRP021940_embryo | 0 .10 RPM | 74 .29 RPM |
SRP021940_placental_villous | 0 .10 RPM | 42 .10 RPM |
SRP021940_synovial_membrane | 0 .08 RPM | 32 .97 RPM |
SRP021940_testis | 0 .00 RPM | 3 .20 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001663 | 4 retrocopies | |
Equus caballus | ENSECAG00000022038 | 1 retrocopy |
retro_ecab_1121 ,
|
Macaca mulatta | ENSMMUG00000017045 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005256 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017763 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014571 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002506 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009806 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009867 | 1 retrocopy |