>retro_ecab_155
GACAGAAATATAGAAATGCTTCAGGTGGAGGAAGAGAGAGAACTAAGACTTAAAAAAATGAAGAAATTTTTTGAGAAACA
TTTGACTCAATTAGGAAATGCAATAAGGATTATAGGTATTCCAGAGGGAGAAGAGAGGAAGAAAGGAGCAGGGAGCTTGT
TCAAAGAAATAATAGCTGAGAACTTCCCAAACCTGGGGAAAAAACTAGACTTACAAGTATATGAAGCCAATAGAACTCTT
AATTACATCAATGCAAAAAGACCTTCTCCAAAGCACATAATAGTAAAAGTGGCAAAAGTCAATGAGGAA
ORF - retro_ecab_155 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
66.35 % |
Parental protein coverage: |
58.76 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | DRTFEIIQSEENKEKRMKKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNLGKKL |
| DR..E..Q.EE..E.R.KK.K....EK.LT.....IRIIGIPEGEE..K...SLFKEIIAENFPNLGKKL |
Retrocopy | DRNIEMLQVEEERELRLKKMK-KFFEKHLTQLGNAIRIIGIPEGEERKKGAGSLFKEIIAENFPNLGKKL |
|
Parental | DLQVHEANRTPNYIKAKRPSPRHIVLKLVKVNDK |
| DLQV.EANRT.NYI.AKRPSP.HI..K..KVN.. |
Retrocopy | DLQVYEANRTLNYINAKRPSPKHIIVKVAKVNEE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
0 .00 RPM |
SRP021940_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP021940_embryo |
0 .00 RPM |
0 .00 RPM |
SRP021940_placental_villous |
0 .00 RPM |
0 .00 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
0 .00 RPM |
SRP021940_testis |
0 .00 RPM |
0 .00 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_155 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_155 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_155 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
11 retrocopies.
Species |
Parental gene accession |
Retrocopies number |
|
Equus caballus | ENSECAG00000012904 | 11 retrocopies |
retro_ecab_1003, retro_ecab_1068, retro_ecab_1117, retro_ecab_155 , retro_ecab_407, retro_ecab_695, retro_ecab_702, retro_ecab_768, retro_ecab_856, retro_ecab_877, retro_ecab_906,
|